Account Options

  1. Sign in
The old Google Groups will be going away soon.
Switch to the new Google Groups.
Google Groups Home
« Groups Home
gnumap-users
Home
+ new post
About this group
Apply for group membership
Turn off indel calling?
Options
There are currently too many topics in this group that display first. To make this topic appear first, remove this option from another topic.
There was an error processing your request. Please try again.
flag
   5 messages - Collapse all  -  Translate all to Translated (View all originals)
The group you are posting to is a Usenet group. Messages posted to this group will make your email address visible to anyone on the Internet.
Your reply message has not been sent.
Your post was successful
 
From:
To:
Cc:
Followup To:
Add Cc | Add Followup-to | Edit Subject
Subject:
Validation:
For verification purposes please type the characters you see in the picture below or the numbers you hear by clicking the accessibility icon. Listen and type the numbers you hear
 
W. Evan Johnson  
View profile  
 More options Apr 29 2011, 6:50 pm
From: W. Evan Johnson <wevanjohn...@gmail.com>
Date: Fri, 29 Apr 2011 16:50:13 -0600
Local: Fri, Apr 29 2011 6:50 pm
Subject: Turn off indel calling?
Print | Individual message | Show original | Report this message | Find messages by this author
Can I turn off indel calling in the newest GNUMAP?

 
You must Sign in before you can post messages.
To post a message you must first join this group.
Please update your nickname on the subscription settings page before posting.
You do not have the permission required to post.
changjin hong  
View profile  
 More options Apr 29 2011, 7:08 pm
From: changjin hong <changjin.h...@gmail.com>
Date: Fri, 29 Apr 2011 17:08:15 -0600
Local: Fri, Apr 29 2011 7:08 pm
Subject: Re: Turn off indel calling?
Print | Individual message | Show original | Report this message | Find messages by this author
The Indel means insertion or deletion in an alignment transcript? Can
you give me an simple example of how you want to turn off indel calling?

On 04/29/2011 04:50 PM, W. Evan Johnson wrote:


 
You must Sign in before you can post messages.
To post a message you must first join this group.
Please update your nickname on the subscription settings page before posting.
You do not have the permission required to post.
Evan Johnson  
View profile  
 More options Apr 29 2011, 7:13 pm
From: Evan Johnson <wevanjohn...@gmail.com>
Date: Fri, 29 Apr 2011 16:13:23 -0700 (PDT)
Local: Fri, Apr 29 2011 7:13 pm
Subject: Re: Turn off indel calling?
Print | Individual message | Show original | Report this message | Find messages by this author
Changjin,

You are correct about the definition of indels. The newest GNUMAP-SNP
can call indels, but I don't want to call them in some of my projects,
just wanted to turn this off.

Evan

On Apr 29, 5:08 pm, changjin hong <changjin.h...@gmail.com> wrote:


 
You must Sign in before you can post messages.
To post a message you must first join this group.
Please update your nickname on the subscription settings page before posting.
You do not have the permission required to post.
Nathan Clement  
View profile  
 More options Apr 29 2011, 7:24 pm
From: Nathan Clement <nathanlclem...@gmail.com>
Date: Fri, 29 Apr 2011 18:24:14 -0500
Local: Fri, Apr 29 2011 7:24 pm
Subject: Re: Turn off indel calling?
Print | Individual message | Show original | Report this message | Find messages by this author
The indel calling only prints extra information at each position in the genome.  Are you simply asking to remove the stuff at the end of each line in the gmp file?

On Apr 29, 2011, at 6:13 PM, Evan Johnson wrote:


 
You must Sign in before you can post messages.
To post a message you must first join this group.
Please update your nickname on the subscription settings page before posting.
You do not have the permission required to post.
W. Evan Johnson  
View profile  
 More options Apr 29 2011, 8:05 pm
From: "W. Evan Johnson" <wevanjohn...@gmail.com>
Date: Fri, 29 Apr 2011 18:05:14 -0600
Local: Fri, Apr 29 2011 8:05 pm
Subject: Re: Turn off indel calling?
Print | Individual message | Show original | Report this message | Find messages by this author
Yes, but previously the pair-HMM did not allow gaps. Can I add a flag to go back to this?

On Apr 29, 2011, at 5:24 PM, Nathan Clement wrote:


 
You must Sign in before you can post messages.
To post a message you must first join this group.
Please update your nickname on the subscription settings page before posting.
You do not have the permission required to post.
End of messages
« Back to Discussions « Newer topic     Older topic »

Create a group - Google Groups - Google Home - Terms of Service - Privacy Policy
©2012 Google