gnumap-users

I think I've got the bug fixed. Sorry for any inconvenience this has caused you. We've pushed

Thank you so much it's work WYSNI Le mardi 7 novembre 2017 04:53:44 UTC+1, cj a écrit : Hi, WYSNI

Hello, I'd also like to map paired end (DNA) as far a I understand I should: map R1, map R2, then

We have moved gnumap to github. We will be updating the http://dna.cs.byu.edu/gnumap/ site to reflect

g++ -m64 -O3 -o obj/Driver.o -c src/Driver.cpp -Iinc/ -Ilib/gsl-1.14/ In file included from src/

The issue is resolved. The revised gnumaps package is available at jlab.bu.edu. On Tuesday, January

Thank you so much! Jessie On Wednesday, January 13, 2016 at 5:44:03 PM UTC-8, Dr Clement wrote: It

Hi, I've been trying to run GNUMAP on my fastq files with the -d flag for a-to-g detection, but

Certainly. I'll try and answer your questions below. On Tue, Jun 17, 2014 at 1:46 PM, VG <

CJ, Any intuition here? Thanks! Evan On Jun 11, 2014, at 11:11 AM, Varun Gupta <gupta567varun@

The machines have 47GB of memory. I have made all of that available. The err log is attached. On Mon,

So the MPI version is required to use the gnumaps.pl script? I get no error on running: ./

Can you check and see if your machine has the file: /usr/include/gnu/stubs-64.h Or if there is any

The updated gnumap-bs pipeline has been fixed to resolve this issue. Now, it supports more general

Thanks Mark On Tuesday, December 10, 2013, W. Evan Johnson wrote: Yes, sorry for this hiccup. The

I removed the --fast flags then it returned matches On Wednesday, November 13, 2013 12:14:14 AM UTC+1

Let me try and explain as best I can. There's a paper that goes into more technical detail if you

Thanks - after uncommenting line 74 it worked.

If a single read aligns to multiple regions, the output will print to all the best locations. ie: if

See below. Nathan On Nov 4, 2011, at 3:00 PM, Bogdan Tanasa wrote: > Dear all, > > please

Nathan- Just ran a few analyses, everything looks great. Thanks! Matthew On Sat, Oct 29, 2011 at 6:57

This is an issue with static and/or dynamic linking in c++. If you edit the Makefile, on about line

See below. Nathan On Aug 19, 2011, at 12:34 PM, changjin wrote: > Hi, Nathan > > I need more

GNUMAP users, The latest version of GNUMAP (version 2.6.0) has just bee uploaded to the website. You

Yes, but previously the pair-HMM did not allow gaps. Can I add a flag to go back to this? On Apr 29,

Yes the memory limit was reached, I was using 8Gb RAM, but reducing the number of processors also

Nathan, thanks for doing this promptly. We need results from both editing and bisulfite ASAP! On Mar

Okay, maybe it's not the same. I thought illumine qseq was the same as illumina fastq. On Mar 5,

Nathan, Can you make -p -a .9 default parameter settings for GNUMAP? To my knowledge, everyone is

Thanks Nate. Not a problem. I just filtered them out myself, but didn't want for this to confuse