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Welcome to GenometriCorr user's group!

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JUAN PABLO MARCZUK ROJAS, … favorov4

Jan 10

Contradictory results according to Jaccard and Projection tests

Dear Sasha, Thanks for your quick answer. I am attaching a link to an R object containing the results

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Contradictory results according to Jaccard and Projection tests

Dear Sasha, Thanks for your quick answer. I am attaching a link to an R object containing the results

Jan 10

3/23/21

1.1.24 released

1.1.24 released the alternatives (attraction, repulsion, two.sided) are rewritten Thanks to Vera

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1.1.24 released

1.1.24 released the alternatives (attraction, repulsion, two.sided) are rewritten Thanks to Vera

3/23/21

favorov, … rmash4

4/18/20

1.1.21 released

I'm trying the latest version: > install.packages("~/Downloads/GenometriCorr_1.1.23.tar.

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1.1.21 released

I'm trying the latest version: > install.packages("~/Downloads/GenometriCorr_1.1.23.tar.

4/18/20

3/13/20

1.1.23 released

Version 1.1.23 released. RangedData mentions are removed from the package The main functions work

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1.1.23 released

Version 1.1.23 released. RangedData mentions are removed from the package The main functions work

3/13/20

deeksha bhartiya, Alexander Favorov3

10/2/19

Help in understanding output

Dear Sasha I am attaching one of my complete result file. Please help me understand that. Also to

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Help in understanding output

Dear Sasha I am attaching one of my complete result file. Please help me understand that. Also to

10/2/19

9/27/19

1.1.22 released

1.1.22 released We started to take chromosomes that have an empty reference or an empty query into

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1.1.22 released

1.1.22 released We started to take chromosomes that have an empty reference or an empty query into

9/27/19

deeksha bhartiya, … favorov9

9/12/19

Dear Sasha Thanks a lot!! Best Deeksha On Fri, Aug 30, 2019 at 12:54 AM favorov <fav...@gmail.com

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Dear Sasha Thanks a lot!! Best Deeksha On Fri, Aug 30, 2019 at 12:54 AM favorov <fav...@gmail.com

9/12/19

deeksha bhartiya, Alexander Favorov2

6/30/19

enrichment analysis

Yes, there are the projection statistics and the jaccard statistics that are for this purpose. On Fri

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enrichment analysis

Yes, there are the projection statistics and the jaccard statistics that are for this purpose. On Fri

6/30/19

4/17/19

1.1.20 released

Version 1.1.20 released. It is a bugfix. A few previous versions overestimated the chromosome lengths

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1.1.20 released

Version 1.1.20 released. It is a bugfix. A few previous versions overestimated the chromosome lengths

4/17/19

6/6/18

1.1.19 released

1.1.10 in the previous subject was a typo :) 1.1.19 permut.number parameter is added. It is a common

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1.1.19 released

1.1.10 in the previous subject was a typo :) 1.1.19 permut.number parameter is added. It is a common

6/6/18

6/6/18

1.1.10 is released

1.1.19 permut.number parameter is added. It is a common default for all the three permutation numbers

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1.1.10 is released

1.1.19 permut.number parameter is added. It is a common default for all the three permutation numbers

6/6/18

6/4/18

1.1.18 is released

1.1.18 is released today. 1) if map space is not normalized, the mapping code normalizes it and warns

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1.1.18 is released

1.1.18 is released today. 1) if map space is not normalized, the mapping code normalizes it and warns

6/4/18

Sam Arsenault, favorov2

6/4/18

Problem with Mapped implementation of GenometriCorr

It is fixed in 1.1.18 Thank you! On Thursday, July 13, 2017 at 12:17:14 PM UTC-4, Sam Arsenault wrote

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Problem with Mapped implementation of GenometriCorr

It is fixed in 1.1.18 Thank you! On Thursday, July 13, 2017 at 12:17:14 PM UTC-4, Sam Arsenault wrote

6/4/18

12/21/16

1.1.16 bugfix and 1.1.17 are released

1.1.16 Oveflow bug in projection test fixed, thanks to Tyler Funnell from BCCRC, Vancouver 1.1.17

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1.1.16 bugfix and 1.1.17 are released

1.1.16 Oveflow bug in projection test fixed, thanks to Tyler Funnell from BCCRC, Vancouver 1.1.17

12/21/16

10/15/15

1.1.15 released

It is bugfix. The projection measure did not work in 1.13 and 1.14. Fixed Also, coverage information

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1.1.15 released

It is bugfix. The projection measure did not work in 1.13 and 1.14. Fixed Also, coverage information

10/15/15

Abdul Kader Kheirallah, Alexander Favorov4

7/29/15

Installation problem

Hi Sasha again, It worked with new R version... Now it's time to do some data analysis :) Best,

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Installation problem

Hi Sasha again, It worked with new R version... Now it's time to do some data analysis :) Best,

7/29/15

6/8/15

1.1.14 released

Some bugs in vignette fixed We add the 'scaled.absolute.min.distance.sum' to the result even

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1.1.14 released

Some bugs in vignette fixed We add the 'scaled.absolute.min.distance.sum' to the result even

6/8/15

3/15/15

1.1.13 released

Bugfix, mainly A lot of typos in documentation fixed. Starting and trailing spaces are now trimmed in

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1.1.13 released

Bugfix, mainly A lot of typos in documentation fixed. Starting and trailing spaces are now trimmed in

3/15/15

1/14/15

1.1.12 released

Code optimized. Documentation improved. http://genometricorr.sourceforge.net/

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1.1.12 released

Code optimized. Documentation improved. http://genometricorr.sourceforge.net/

1/14/15

9/16/14

1.1.10 released

Minor bugfix. Compliant with Bioconductor 2.14

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1.1.10 released

Minor bugfix. Compliant with Bioconductor 2.14

9/16/14

9/9/13

After 1.1.9, the Galaxy integration part was updated. See http://genometricorr.sourceforge.net/galaxy

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After 1.1.9, the Galaxy integration part was updated. See http://genometricorr.sourceforge.net/galaxy

9/9/13

squgusi, … Cugusi, Simona3

6/27/13

Galaxy plug-in and configuration file

Hi Sasha thanks for replying my knowledge of programming is less than basics, so I apologize in

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Galaxy plug-in and configuration file

Hi Sasha thanks for replying my knowledge of programming is less than basics, so I apologize in

6/27/13

Chris Whelan, Alexander Favorov2

5/4/13

Help with interpreting results

Hi Chris, thank you for using GenometriCorr! The result you see ("scaled.absolute.min.distance.

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Help with interpreting results

Hi Chris, thank you for using GenometriCorr! The result you see ("scaled.absolute.min.distance.

5/4/13

favorov, … Alexander Favorov7

7/2/12

Nice to hear it. Thank you! On Mon, Jul 2, 2012 at 1:16 PM, ltgray <soulca...@gmail.com>

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Nice to hear it. Thank you! On Mon, Jul 2, 2012 at 1:16 PM, ltgray <soulca...@gmail.com>

7/2/12

favorov, ltgray3

6/28/12

Thank you! Please try whether the error persists on 1.1.7 the is released right now, On Thursday,

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Thank you! Please try whether the error persists on 1.1.7 the is released right now, On Thursday,

6/28/12

3/23/12

readTableToIranges

Dear users, unfortunately, Bioconductor requires to remove the function from the package. If anybody

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readTableToIranges

Dear users, unfortunately, Bioconductor requires to remove the function from the package. If anybody

3/23/12

Katherine Mejia, Alexander Favorov3

2/29/12

Thanks, Katherine

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Thanks, Katherine

2/29/12

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