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Description:
Open forum for discussing GenMAPP, asking questions, reporting bugs and suggesting new features.
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data set
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hi could suggest me some website for microarray data for breast cancer
data that is compatible for GenMAPP , i tried standford but as for the
GenMAPP requirements i not able to get the data
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Upcoming GenMAPP server maintenance
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The GenMAPP servers will be temporarily off-line due to scheduled
maintenance, starting on Wednesday November 18th. The server downtime
is estimated to be about 24 hours.
GenMAPP Development Team
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using own dataset
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is it possible to use my own dataset of breast cancer data to build
pathways using genmapp and mappfinder.
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Affymetrix Human Gene 1.0 ST
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Hi,
I'm trying to use GenMAPP to analyze data from the Human Gene 1.0 St
array from Affymtrix. I can find the Right Gene Database to use for
it. Can you please help me?
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New pathway archive Arabidopsis thaliana
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Dear GenMAPP users,
A new Contributed pathway archive for Arabidopsis is available for
download through the Downloader feature in GenMAPP
(At_MAPP_Archive_Contributed_2 0090902). The pathways included in this
archive were collected from WikiPathways ([link]).
Kristina Hanspers... more »
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New GDBs for Arabidopsis, Plasmodium, Vibrio, update to E. coli K12
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Dear GenMAPP Users, We are pleased to announce the release of three new GenMAPP Gene Databases for Arabidopsis thaliana, Plasmodium falciparum, Vibrio cholerae, and an update to the Escherichia coli K12 Gene Database. These databases were created automatically by the Bioinformatics Group at Loyola Marymount University using a suite of programs called XMLPipeDB,... more »
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Problems with MappFinder
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Hi,
Right now I am working on Bovine mRNA-seq data. So Basically I have
Ensembl Id as identifier.
In Genmapp there are two Bovine Gene Databse. Bt-Std_20060526.gdb and
Bt-Std_20070517.gdb.
When I use the 526.gdb, roughly 7181 of the identifiers out of 24,000
are not recognized. However when I use 517.gdb, around 3000 Ensembl... more »
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Problem importing data into MAPPBuilder
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Hi,
Our software package, FlexArray, is capable of exporting data in
MAPPBuilder format. Recently one of our users reported that he is
unable to import such a file to MAPPBuilder.
This is roughly how the file looks like:
GeneID SystemCode Label Head Remarks MAPPName
OR51L1 O OR51L1 test... more »
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Request for letters of support for GenMAPP
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Dear GenMAPP users,
In order to continue development and support of the GenMAPP
application, we rely heavily on grant support from the NIH. We are
right now in the process of preparing applications for additional
grant support for GenMAPP.
The next version of GenMAPP will integrate with major public gene and... more »
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Input data
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Hello,
I am new to GenMAPP MAPPFinder. I need some help understanding the
process of input data import into GenMAPP.
I have installed the GenMAPP 2. I am using Gene Databases Hs-
Std_20070817.gdb
My expression data set contains four columns.First column is Agilent
probe Ids and second column is system code as Ag,Third colums contains... more »
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