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Lara Baptista
, …
Mark Miller
7
6/27/20
ERROR: data file not found: riss_COI_genbank_pisinna_aln.nex!
Hi Lena, The infile name must agree between garli.conf and CIPRES. If you are using CIPRES, CIPRES is
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ERROR: data file not found: riss_COI_genbank_pisinna_aln.nex!
Hi Lena, The infile name must agree between garli.conf and CIPRES. If you are using CIPRES, CIPRES is
6/27/20
cynthi...@gmail.com
,
Derrick Zwickl
2
10/8/18
Questions about compiling garli2.01
Hi Cynthia, I think that problem has been corrected in the latest code. Get it from the github site:
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Questions about compiling garli2.01
Hi Cynthia, I think that problem has been corrected in the latest code. Get it from the github site:
10/8/18
Stefan Ekman
,
Derrick Zwickl
3
9/4/17
problem compiling garli 2.1 on Mac OS 10.12
Hi Derrick, Adjusting line 53 in reconnode.h helped! I was able to compile sequential and parallel
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problem compiling garli 2.1 on Mac OS 10.12
Hi Derrick, Adjusting line 53 in reconnode.h helped! I was able to compile sequential and parallel
9/4/17
bgene...@gmail.com
,
Derrick Zwickl
2
7/10/17
Bootstrap stopping unexpectedly
Hi Bruno, There's no obvious cause for this that I can think of. If you take a look at the end of
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Bootstrap stopping unexpectedly
Hi Bruno, There's no obvious cause for this that I can think of. If you take a look at the end of
7/10/17
ballen...@gmail.com
4/13/17
Programation of a new model
Hi, Is there an example of the .mod file for the programation of a new model (In my case VT)?
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Programation of a new model
Hi, Is there an example of the .mod file for the programation of a new model (In my case VT)?
4/13/17
max maronna
, …
Derrick Zwickl
3
12/7/16
partitioned matrix: dna + morphology
Hi All, I'm sorry, but Garli Documentation and Support has been in a sad state for a while due to
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partitioned matrix: dna + morphology
Hi All, I'm sorry, but Garli Documentation and Support has been in a sad state for a while due to
12/7/16
zana faqe
,
Thiago Moreira
2
12/6/16
Problem with downloading GARLI
Nevermind. got it is here https://code.google.com/archive/p/garli/downloads Disable any script bloker
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Problem with downloading GARLI
Nevermind. got it is here https://code.google.com/archive/p/garli/downloads Disable any script bloker
12/6/16
J Ramírez
,
Derrick Zwickl
2
7/26/16
Strange number of trees in the allboot.tree file
Hi Juan, That doesn't make sense to me either. I'm not sure how they have things set up
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Strange number of trees in the allboot.tree file
Hi Juan, That doesn't make sense to me either. I'm not sure how they have things set up
7/26/16
zana faqe
7/12/16
Downloading problem
please could you help me to download the garli software? Regards Aram Jaf
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Downloading problem
please could you help me to download the garli software? Regards Aram Jaf
7/12/16
millipede...@gmail.com
,
Derrick Zwickl
2
6/28/16
garli bootstrap analysis terminating early
Hi, Take a look at the end of the .screen.log file. Does it indicate that it completed successfully?
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garli bootstrap analysis terminating early
Hi, Take a look at the end of the .screen.log file. Does it indicate that it completed successfully?
6/28/16
hannah...@gmail.com
,
Derrick Zwickl
2
5/9/16
ERROR: Multiple models specified, but only one data subset found
Hi Hannah, There are a few formatting problems with your nexus file. There is no "end;"
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ERROR: Multiple models specified, but only one data subset found
Hi Hannah, There are a few formatting problems with your nexus file. There is no "end;"
5/9/16
max maronna
5/15/15
partitioned matrix: dna + morphology
Hi Derrick and Garli users, I´m trying to run a partitioned analysis, considering several partitions
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partitioned matrix: dna + morphology
Hi Derrick and Garli users, I´m trying to run a partitioned analysis, considering several partitions
5/15/15
Amalia Diaz
,
Derrick Zwickl
2
3/2/15
Problem with Garli output
Hi Amalia, There isn't anything in the config file that would turn off tree output. How and where
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Problem with Garli output
Hi Amalia, There isn't anything in the config file that would turn off tree output. How and where
3/2/15
Natalia Trujillo Arias
, …
Derrick Zwickl
4
2/21/15
GARLI-IUPAC CODE?
Thanks! El viernes, 20 de febrero de 2015, 20:23:33 (UTC-3), Adam Bazinet escribió: Not that I'm
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GARLI-IUPAC CODE?
Thanks! El viernes, 20 de febrero de 2015, 20:23:33 (UTC-3), Adam Bazinet escribió: Not that I'm
2/21/15
Derrick Zwickl
2/18/15
Re: garli tree output format
Hi Brigida, My guess is that the RAxML distance function is expecting fully bifurcating trees. RAxML
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Re: garli tree output format
Hi Brigida, My guess is that the RAxML distance function is expecting fully bifurcating trees. RAxML
2/18/15
max maronna
,
Derrick Zwickl
2
1/29/15
Partition strategy (+ alternative support methods)
Hi Max, No, Garli will currently only accept the specification of a partition scheme using a Nexus
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Partition strategy (+ alternative support methods)
Hi Max, No, Garli will currently only accept the specification of a partition scheme using a Nexus
1/29/15
Thomas Fisher-York
,
Derrick Zwickl
2
12/5/14
Initial trees
Hello, Yes, all individuals start from the same tree, whether a random, stepwise addition or user
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Initial trees
Hello, Yes, all individuals start from the same tree, whether a random, stepwise addition or user
12/5/14
goo...@d-dub.org.uk
,
Derrick Zwickl
8
12/2/14
NCL in Garli 2.01 doesn't like NEXUS tree file for optimizeinputonly
Hello, Thanks for all your efforts in testing out all of the possibilities in this situation, and
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NCL in Garli 2.01 doesn't like NEXUS tree file for optimizeinputonly
Hello, Thanks for all your efforts in testing out all of the possibilities in this situation, and
12/2/14
Cynthia Asorey
11/17/14
problem calculating consensus tree in PAUP
Dear all, I´m working with Garli and I have calculated the consensus tree in Paup as it´s suggest in
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problem calculating consensus tree in PAUP
Dear all, I´m working with Garli and I have calculated the consensus tree in Paup as it´s suggest in
11/17/14
Cynthia Asorey
,
Adam Bazinet
2
10/20/14
Does Garli online version calculate the bootstrap consensus tree?
Hi Cynthia, Yes, the GARLI web service at molecularevolution.org does in fact calculate a 50%
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Does Garli online version calculate the bootstrap consensus tree?
Hi Cynthia, Yes, the GARLI web service at molecularevolution.org does in fact calculate a 50%
10/20/14
alicia alvarez
,
Derrick Zwickl
9
9/11/14
optimize TNT tree
This is a good news! Thanks a lot for all your help! Best, Alicia El miércoles, 10 de septiembre de
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optimize TNT tree
This is a good news! Thanks a lot for all your help! Best, Alicia El miércoles, 10 de septiembre de
9/11/14
anon...@gmail.com
, …
Derrick Zwickl
11
8/13/14
Problems compiling static for BOINC
Hi. Yes, it should all be here: ls -Ahln static_boinc_install_dir/lib/ total 7.3M -rw-r--r-- 1 1000
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Problems compiling static for BOINC
Hi. Yes, it should all be here: ls -Ahln static_boinc_install_dir/lib/ total 7.3M -rw-r--r-- 1 1000
8/13/14
alicia alvarez
8/12/14
branch length optimization, combined tree
Hi I am looking for a software that let me optimizing the branch lenghts (for subsequent clade age
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branch length optimization, combined tree
Hi I am looking for a software that let me optimizing the branch lenghts (for subsequent clade age
8/12/14
Zhao LEI
,
Derrick Zwickl
2
7/30/14
Problem allocating cond. likelihood array
Hello, The minimum amount of memory that this dataset would require (150663 MB = 150 GB) is much more
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Problem allocating cond. likelihood array
Hello, The minimum amount of memory that this dataset would require (150663 MB = 150 GB) is much more
7/30/14
arr...@poczta.fm
,
eik...@googlemail.com
5
5/28/14
Error while Garli 2.0 debian compilation
Good to hear. Best eike Am Dienstag, 27. Mai 2014 19:52:34 UTC+2 schrieb arr...@poczta.fm: Dear Eike,
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Error while Garli 2.0 debian compilation
Good to hear. Best eike Am Dienstag, 27. Mai 2014 19:52:34 UTC+2 schrieb arr...@poczta.fm: Dear Eike,
5/28/14
Prudhvi Raj
,
Derrick Zwickl
4
12/19/13
Error in Nexus file of Morphological data
Hi Prudhvi, It is easier for me to troubleshooting these problems if you let me know the error
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Error in Nexus file of Morphological data
Hi Prudhvi, It is easier for me to troubleshooting these problems if you let me know the error
12/19/13
Yuan Jin
,
Derrick Zwickl
4
9/16/13
Optimize best tree from Phyml by Garli
Hi Juan Jin, I'm sorry, I guess that I misunderstood your initial question. My initial answer
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Optimize best tree from Phyml by Garli
Hi Juan Jin, I'm sorry, I guess that I misunderstood your initial question. My initial answer
9/16/13
Britta
,
Derrick Zwickl
2
8/2/13
Excluding positions and charpartitions
Hi Britta, I see why that message would be confusing. The basic reason is that by definition a
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Excluding positions and charpartitions
Hi Britta, I see why that message would be confusing. The basic reason is that by definition a
8/2/13
rob.l...@gmail.com
,
Derrick Zwickl
2
5/2/13
The fastest implementation of garli
Hi Rob, No, the Garli Beagle version won't do what you want. I implemented that prototype version
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The fastest implementation of garli
Hi Rob, No, the Garli Beagle version won't do what you want. I implemented that prototype version
5/2/13
deep...@gmail.com
,
Derrick Zwickl
2
4/1/13
error while loading shared libraries: libncl-2.1.15.so:
Hi Piet, Did you compile NCL and GARLI manually (ie, configure, make, make install), or use the
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error while loading shared libraries: libncl-2.1.15.so:
Hi Piet, Did you compile NCL and GARLI manually (ie, configure, make, make install), or use the
4/1/13