ENC: PNAS Early Edition for 24 Nov 2009

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Carlos Henrique de Freitas Burity

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Nov 25, 2009, 12:57:55 PM11/25/09
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Prof. Dr. Carlos Henrique de Freitas Burity

 
Coordenador dos Cursos de Ciências Biológicas &

Superior de Tecnologia em Gestão Ambiental - CSE

(21) 2672-7841; (21) 9308-4025.

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De: pnas-...@alerts.stanford.edu [mailto:pnas-...@alerts.stanford.edu]
Enviada em: quarta-feira, 25 de novembro de 2009 03:59
Para: Carlos Henrique de Freitas Burity
Assunto: PNAS Early Edition for 24 Nov 2009

 

 

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PNAS Online Early Edition Contents Alert

The following articles are published online before print in PNAS Early Edition for 17 Nov 2009 to 24 Nov 2009.


LETTERS (Online Only)


Dental microwear of cave bears: The missing temperate/boreal vegetarian "carnivore"

Hervé Bocherens

Reply to Bocherens: Dental microwear and stable isotopes on bone collagen are complementary to sort out cave bear diets

Stéphane Peigné, Cyrielle Goillot, Mietje Germonpré, Cécile Blondel, Olivier Bignon, and Gildas Merceron


COMMENTARIES


Twenty years of combinatorial antibody libraries, but how well do they mimic the immunoglobulin repertoire?

Mats A. A. Persson

There's more to speech perception than meets the ear

John F. Houde

A cornucopia of Helitrons shapes the maize genome

Cédric Feschotte and Ellen J. Pritham

Organelle docking: R-SNAREs are late

Matthijs Verhage

Cryptic microbial communities in Antarctic deserts

Don A. Cowan

Pairing in plants: Import is important

James A. Birchler, Zhi Gao, and Fangpu Han


Anthropology


From past to future agricultural expertise in Africa: Jola women of Senegal expand market-gardening

Olga F. Linares

Synchronous extinction of North America's Pleistocene mammals

J. Tyler Faith and Todd A. Surovell


Biochemistry


The appearance of pyrrolysine in tRNAHis guanylyltransferase by neutral evolution

Ilka U. Heinemann, Patrick O'Donoghue, Catherine Madinger, Jack Benner, Lennart Randau, Christopher J. Noren, and Dieter Söll

Photoactivation mechanism of PAmCherry based on crystal structures of the protein in the dark and fluorescent states

Fedor V. Subach, Vladimir N. Malashkevich, Wendy D. Zencheck, Hui Xiao, Grigory S. Filonov, Steven C. Almo, and Vladislav V. Verkhusha

A nonprotein thermal hysteresis-producing xylomannan antifreeze in the freeze-tolerant Alaskan beetle Upis ceramboides

Kent R. Walters, Jr., Anthony S. Serianni, Todd Sformo, Brian M. Barnes, and John G. Duman

Structural determinant for switching between the polymerase and exonuclease modes in the PCNA-replicative DNA polymerase complex

Hirokazu Nishida, Kouta Mayanagi, Shinichi Kiyonari, Yuichi Sato, Takuji Oyama, Yoshizumi Ishino, and Kosuke Morikawa

Med8, Med18, and Med20 subunits of the Mediator head domain are interdependent upon each other for folding and complex formation   OPEN ACCESS ARTICLE

Zaki Shaikhibrahim, Hamidur Rahaman, Pernilla Wittung-Stafshede, and Stefan Björklund

Gaining ligand selectivity in thyroid hormone receptors via entropy

Leandro Martínez, Alessandro S. Nascimento, Fabio M. Nunes, Kevin Phillips, Ricardo Aparicio, Sandra Martha G. Dias, Ana Carolina M. Figueira, Jean H. Lin, Phuong Nguyen, James W. Apriletti, Francisco A. R. Neves, John D. Baxter, Paul Webb, Munir S. Skaf, and Igor Polikarpov

A different mechanism for the inhibition of the carboxyltransferase domain of acetyl-coenzyme A carboxylase by tepraloxydim

Song Xiang, Matthew M. Callaghan, Keith G. Watson, and Liang Tong

Transcription factors mediate long-range enhancer–promoter interactions   OPEN ACCESS ARTICLE

Ilias K. Nolis, Daniel J. McKay, Eva Mantouvalou, Stavros Lomvardas, Menie Merika, and Dimitris Thanos


Biophysics and Computational Biology


Acidianus filamentous virus 1 coat proteins display a helical fold spanning the filamentous archaeal viruses lineage

Adeline Goulet, Stéphanie Blangy, Peter Redder, David Prangishvili, Catarina Felisberto-Rodrigues, Patrick Forterre, Valérie Campanacci, and Christian Cambillau

Identification of a single peridinin sensing Chl-a excitation in reconstituted PCP by crystallography and spectroscopy

Tim Schulte, Dariusz M. Niedzwiedzki, Robert R. Birge, Roger G. Hiller, Tomás Polívka, Eckhard Hofmann, and Harry A. Frank

Multiple conformations of full-length p53 detected with single-molecule fluorescence resonance energy transfer

Fang Huang, Sridharan Rajagopalan, Giovanni Settanni, Richard J. Marsh, Daven A. Armoogum, Nick Nicolaou, Angus J. Bain, Eitan Lerner, Elisha Haas, Liming Ying, and Alan R. Fersht

Inward-facing conformation of glutamate transporters as revealed by their inverted-topology structural repeats

Thomas J. Crisman, Shaogang Qu, Baruch I. Kanner, and Lucy R. Forrest

A minimal sequence code for switching protein structure and function   OPEN ACCESS ARTICLE

Patrick A. Alexander, Yanan He, Yihong Chen, John Orban, and Philip N. Bryan

Conformations and free energy landscapes of polyproline peptides

Mahmoud Moradi, Volodymyr Babin, Christopher Roland, Thomas A. Darden, and Celeste Sagui


Cell Biology


Inositol pyrophosphate mediated pyrophosphorylation of AP3B1 regulates HIV-1 Gag release

Cristina Azevedo, Adam Burton, Ezequiel Ruiz-Mateos, Mark Marsh, and Adolfo Saiardi

A microRNA regulatory mechanism of osteoblast differentiation

Hiroyuki Inose, Hiroki Ochi, Ayako Kimura, Koji Fujita, Ren Xu, Shingo Sato, Makiko Iwasaki, Satoko Sunamura, Yasuhiro Takeuchi, Seiji Fukumoto, Kuniaki Saito, Takashi Nakamura, Haruhiko Siomi, Hiroshi Ito, Yoshiyasu Arai, Ken-ichi Shinomiya, and Shu Takeda

Mapping polypeptide interactions of the SecA ATPase during translocation   OPEN ACCESS ARTICLE

Benedikt W. Bauer and Tom A. Rapoport

Regulation of Hsp90 client proteins by a Cullin5-RING E3 ubiquitin ligase

Elana S. Ehrlich, Tao Wang, Kun Luo, Zuoxiang Xiao, Anna Maria Niewiadomska, Tara Martinez, Wanping Xu, Len Neckers, and Xiao-Fang Yu

A progeria mutation reveals functions for lamin A in nuclear assembly, architecture, and chromosome organization   OPEN ACCESS ARTICLE

Pekka Taimen, Katrin Pfleghaar, Takeshi Shimi, Dorothee Möller, Kfir Ben-Harush, Michael R. Erdos, Stephen A. Adam, Harald Herrmann, Ohad Medalia, Francis S. Collins, Anne E. Goldman, and Robert D. Goldman

The synaptic proteins neurexins and neuroligins are widely expressed in the vascular system and contribute to its functions

Alessia Bottos, Erika Destro, Alberto Rissone, Stefania Graziano, Gabriele Cordara, Barbara Assenzio, Maria Rosaria Cera, Luciana Mascia, Federico Bussolino, and Marco Arese


Chemistry


A kinetic and thermodynamic understanding of O2 tolerance in [NiFe]-hydrogenases

James A. Cracknell, Annemarie F. Wait, Oliver Lenz, Bärbel Friedrich, and Fraser A. Armstrong

Photochemical deposition of cobalt-based oxygen evolving catalyst on a semiconductor photoanode for solar oxygen production

Ellen M. P. Steinmiller and Kyoung-Shin Choi

Biochemical and structural characterization of CYP124: A methyl-branched lipid {omega}-hydroxylase from Mycobacterium tuberculosis

Jonathan B. Johnston, Petrea M. Kells, Larissa M. Podust, and Paul R. Ortiz de Montellano

Single-molecule spectroscopy of the temperature-induced collapse of unfolded proteins

Daniel Nettels, Sonja Müller-Späth, Frank Küster, Hagen Hofmann, Dominik Haenni, Stefan Rüegger, Luc Reymond, Armin Hoffmann, Jan Kubelka, Benjamin Heinz, Klaus Gast, Robert B. Best, and Benjamin Schuler

Differential quantum tunneling contributions in nitroalkane oxidase catalyzed and the uncatalyzed proton transfer reaction

Dan T. Major, Annie Heroux, Allen M. Orville, Michael P. Valley, Paul F. Fitzpatrick, and Jiali Gao

Lethal factor unfolding is the most force-dependent step of anthrax toxin translocation   OPEN ACCESS ARTICLE

Katie L. Thoren, Evan J. Worden, Jaime M. Yassif, and Bryan A. Krantz


Developmental Biology


MicroRNAs couple cell fate and developmental timing in retina   OPEN ACCESS ARTICLE

Sarah Decembrini, Dario Bressan, Robert Vignali, Letizia Pitto, Sara Mariotti, Giuseppe Rainaldi, Xiumei Wang, Monica Evangelista, Giuseppina Barsacchi, and Federico Cremisi

 

Illuminating cell-cycle progression in the developing zebrafish embryo   OPEN ACCESS ARTICLE

Mayu Sugiyama, Asako Sakaue-Sawano, Tadahiro Iimura, Kiyoko Fukami, Tetsuya Kitaguchi, Koichi Kawakami, Hitoshi Okamoto, Shin-ichi Higashijima, and Atsushi Miyawaki

Identification of a region of the DNMT1 methyltransferase that regulates the maintenance of genomic imprints

Ewa Borowczyk, K. Naga Mohan, Leonardo D'Aiuto, M. Cecilia Cirio, and J. Richard Chaillet


Ecology


Whiteflies interfere with indirect plant defense against spider mites in Lima bean

Peng-Jun Zhang, Si-Jun Zheng, Joop J. A. van Loon, Wilhelm Boland, Anja David, Roland Mumm, and Marcel Dicke

Phytoplankton, not allochthonous carbon, sustains herbivorous zooplankton production

Michael T. Brett, Martin J. Kainz, Sami J. Taipale, and Hari Seshan


Economic Sciences


Competition between collective and individual dynamics

Sébastian Grauwin, Eric Bertin, Rémi Lemoy, and Pablo Jensen


Engineering


Two- and three-dimensional folding of thin film single-crystalline silicon for photovoltaic power applications   OPEN ACCESS ARTICLE

Xiaoying Guo, Huan Li, Bok Yeop Ahn, Eric B. Duoss, K. Jimmy Hsia, Jennifer A. Lewis, and Ralph G. Nuzzo


Environmental Sciences-Biological Sciences


Subcellular localization of marine bacterial alkaline phosphatases

Haiwei Luo, Ronald Benner, Richard A. Long, and Jianjun Hu


Evolution


Ubiquitous internal gene duplication and intron creation in eukaryotes

Xiang Gao and Michael Lynch

Phylogenomic analyses reveal convergent patterns of adaptive evolution in elephant and human ancestries

Morris Goodman, Kirstin N. Sterner, Munirul Islam, Monica Uddin, Chet C. Sherwood, Patrick R. Hof, Zhuo-Cheng Hou, Leonard Lipovich, Hui Jia, Lawrence I. Grossman, and Derek E. Wildman

The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography

M. Bunce, T. H. Worthy, M. J. Phillips, R. N. Holdaway, E. Willerslev, J. Haile, B. Shapiro, R. P. Scofield, A. Drummond, P. J. J. Kamp, and A. Cooper


Genetics


Use of high throughput sequencing to observe genome dynamics at a single cell level

D. Parkhomchuk, V. Amstislavskiy, A. Soldatov, and V. Ogryzko

Distribution, diversity, evolution, and survival of Helitrons in the maize genome

Lixing Yang and Jeffrey L. Bennetzen

The polychromatic Helitron landscape of the maize genome

Chunguang Du, Nadezhda Fefelova, Jason Caronna, Limei He, and Hugo K. Dooner


Immunology


Melanoma-associated fibroblasts modulate NK cell phenotype and antitumor cytotoxicity

Mirna Balsamo, Francesca Scordamaglia, Gabriella Pietra, Claudia Manzini, Claudia Cantoni, Monica Boitano, Paola Queirolo, William Vermi, Fabio Facchetti, Alessandro Moretta, Lorenzo Moretta, Maria Cristina Mingari, and Massimo Vitale

Atg9a controls dsDNA-driven dynamic translocation of STING and the innate immune response

Tatsuya Saitoh, Naonobu Fujita, Takuya Hayashi, Keigo Takahara, Takashi Satoh, Hanna Lee, Kohichi Matsunaga, Shun Kageyama, Hiroko Omori, Takeshi Noda, Naoki Yamamoto, Taro Kawai, Ken Ishii, Osamu Takeuchi, Tamotsu Yoshimori, and Shizuo Akira

Regulation of hematopoiesis by the K63-specific ubiquitin-conjugating enzyme Ubc13

Xuefeng Wu, Masahiro Yamamoto, Shizuo Akira, and Shao-Cong Sun


Medical Sciences


The regulatory mechanism of Hsp90{alpha} secretion and its function in tumor malignancy

Xiaofeng Wang, Xiaomin Song, Wei Zhuo, Yan Fu, Hubing Shi, Yun Liang, Maomeng Tong, Guodong Chang, and Yongzhang Luo

A distinctive role of the leukotriene B4 receptor BLT1 in osteoclastic activity during bone loss

Hisako Hikiji, Satoshi Ishii, Takehiko Yokomizo, Tsuyoshi Takato, and Takao Shimizu

Donor treatment with a PHD-inhibitor activating HIFs prevents graft injury and prolongs survival in an allogenic kidney transplant model

W. M. Bernhardt, U. Gottmann, F. Doyon, B. Buchholz, V. Campean, J. Schödel, A. Reisenbuechler, S. Klaus, M. Arend, L. Flippin, C. Willam, M. S. Wiesener, B. Yard, C. Warnecke, and K.-U. Eckardt

The integrin {alpha}4β7 forms a complex with cell-surface CD4 and defines a T-cell subset that is highly susceptible to infection by HIV-1   OPEN ACCESS ARTICLE

Claudia Cicala, Elena Martinelli, Jonathan P. McNally, Diana J. Goode, Ravindra Gopaul, Joseph Hiatt, Katija Jelicic, Shyamasundaran Kottilil, Katilyn Macleod, Angeline O'Shea, Nikita Patel, Donald Van Ryk, Danlan Wei, Massimiliano Pascuccio, Ling Yi, Lyle McKinnon, Preson Izulla, Joshua Kimani, Rupert Kaul, Anthony S. Fauci, and James Arthos

Early onset of autoimmune disease by the retroviral integrase inhibitor raltegravir

Gabriele B. Beck-Engeser, Dan Eilat, Thomas Harrer, Hans-Martin Jäck, and Matthias Wabl


Microbiology


Synergy between bacterial infection and genetic predisposition in intestinal dysplasia

Yiorgos Apidianakis, Chrysoula Pitsouli, Norbert Perrimon, and Laurence Rahme


Neuroscience


PKC{delta} regulates cortical radial migration by stabilizing the Cdk5 activator p35   OPEN ACCESS ARTICLE

Chun-tao Zhao, Kun Li, Jun-tao Li, Wang Zheng, Xu-jun Liang, An-qi Geng, Ning Li, and Xiao-bing Yuan

Regulation of hippocampal H3 histone methylation by acute and chronic stress

Richard G. Hunter, Katharine J. McCarthy, Thomas A. Milne, Donald W. Pfaff, and Bruce S. McEwen

The transmembrane inner ear (Tmie) protein is essential for normal hearing and balance in the zebrafish   OPEN ACCESS ARTICLE

Michelle R. Gleason, Aaron Nagiel, Sophie Jamet, Maria Vologodskaia, Hernán López-Schier, and A. J. Hudspeth

Freedom of movement and the stability of its unfolding in free exploration of mice

Ehud Fonio, Yoav Benjamini, and Ilan Golani

Peripheral modulation of worker bee responses to queen mandibular pheromone

Vanina Vergoz, H. James McQuillan, Lisa H. Geddes, Kiri Pullar, Brad J. Nicholson, Michael G. Paulin, and Alison R. Mercer

Cone photoreceptor mosaic disruption associated with Cys203Arg mutation in the M-cone opsin

Joseph Carroll, Rigmor C. Baraas, Melissa Wagner-Schuman, Jungtae Rha, Cory A. Siebe, Christina Sloan, Diane M. Tait, Summer Thompson, Jessica I. W. Morgan, Jay Neitz, David R. Williams, David H. Foster, and Maureen Neitz

Theta–gamma coupling increases during the learning of item–context associations

Adriano B. L. Tort, Robert W. Komorowski, Joseph R. Manns, Nancy J. Kopell, and Howard Eichenbaum

Activation of innate and humoral immunity in the peripheral nervous system of ALS transgenic mice

Isaac M. Chiu, Hemali Phatnani, Michael Kuligowski, Juan C. Tapia, Monica A. Carrasco, Ming Zhang, Tom Maniatis, and Michael C. Carroll

Subregional neuroanatomical change as a biomarker for Alzheimer's disease

Dominic Holland, James B. Brewer, Donald J. Hagler, Christine Fenema-Notestine, Anders M. Dale, and the Alzheimer's Disease Neuroimaging Initiative

Phase-dependent neuronal coding of objects in short-term memory   OPEN ACCESS ARTICLE

Markus Siegel, Melissa R. Warden, and Earl K. Miller

Amyloid-β42 signals tau hyperphosphorylation and compromises neuronal viability by disrupting alkylacylglycerophosphocholine metabolism

Scott D. Ryan, Shawn N. Whitehead, Leigh Anne Swayne, Tia C. Moffat, Weimin Hou, Martin Ethier, André J. G. Bourgeois, Juliet Rashidian, Alexandre P. Blanchard, Paul E. Fraser, David S. Park, Daniel Figeys, and Steffany A. L. Bennett

Glycogen synthase kinase-3/Shaggy mediates ethanol-induced excitotoxic cell death of Drosophila olfactory neurons

Rachael L. French and Ulrike Heberlein


Pharmacology


Selective N-acylethanolamine-hydrolyzing acid amidase inhibition reveals a key role for endogenous palmitoylethanolamide in inflammation

Carlos Solorzano, Chenggang Zhu, Natalia Battista, Giuseppe Astarita, Alessio Lodola, Silvia Rivara, Marco Mor, Roberto Russo, Mauro Maccarrone, Francesca Antonietti, Andrea Duranti, Andrea Tontini, Salvatore Cuzzocrea, Giorgio Tarzia, and Daniele Piomelli


Physics


Self-assembled artificial cilia

Mojca Vilfan, Anton Potocnik, Blaz Kavcic, Natan Osterman, Igor Poberaj, Andrej Vilfan, and Dusan Babic


Physiology


Studies on expression and function of the TMEM16A calcium-activated chloride channel   OPEN ACCESS ARTICLE

Fen Huang, Jason R. Rock, Brian D. Harfe, Tong Cheng, Xiaozhu Huang, Yuh Nung Jan, and Lily Yeh Jan

Trypsin is a multifunctional factor in spermatogenesis

Chiemi Miura, Takashi Ohta, Yuichi Ozaki, Hideki Tanaka, and Takeshi Miura


Plant Biology


Ca2+, cAMP, and transduction of non-self perception during plant immune responses   OPEN ACCESS ARTICLE

Wei Ma, Zhi Qi, Andries Smigel, Robin K. Walker, Rajeev Verma, and Gerald A. Berkowitz

Hypersensitivity to DNA damage in plant stem cell niches

Nick Fulcher and Robert Sablowski

Live imaging of rapid chromosome movements in meiotic prophase I in maize

Moira J. Sheehan and Wojciech P. Pawlowski

Arabidopsis lipins mediate eukaryotic pathway of lipid metabolism and cope critically with phosphate starvation

Yuki Nakamura, Ryota Koizumi, Guanghou Shui, Mie Shimojima, Markus R. Wenk, Toshiro Ito, and Hiroyuki Ohta


Psychological and Cognitive Sciences-Biological Sciences


The time course of word retrieval revealed by event-related brain potentials during overt speech

Albert Costa, Kristof Strijkers, Clara Martin, and Guillaume Thierry

Oxytocin receptor genetic variation relates to empathy and stress reactivity in humans

Sarina M. Rodrigues, Laura R. Saslow, Natalia Garcia, Oliver P. John, and Dacher Keltner


Psychological and Cognitive Sciences-Social Sciences


Eye movement evidence that readers maintain and act on uncertainty about past linguistic input

Roger Levy, Klinton Bicknell, Tim Slattery, and Keith Rayner

Political partisanship influences perception of biracial candidates' skin tone

Eugene M. Caruso, Nicole L. Mead, and Emily Balcetis

Cerebral and spinal modulation of pain by emotions   OPEN ACCESS ARTICLE

Mathieu Roy, Mathieu Piché, Jen-I. Chen, Isabelle Peretz, and Pierre Rainville

 

Symbolic gestures and spoken language are processed by a common neural system   OPEN ACCESS ARTICLE

Jiang Xu, Patrick J. Gannon, Karen Emmorey, Jason F. Smith, and Allen R. Braun


Statistics


A nonparametric view of network models and Newman–Girvan and other modularities

Peter J. Bickel and Aiyou Chen


Sustainability Science-Social Sciences


Warming increases the risk of civil war in Africa   OPEN ACCESS ARTICLE

Marshall B. Burke, Edward Miguel, Shanker Satyanath, John A. Dykema, and David B. Lobell


Corrections


Correction for Sambriski et al., Uncovering pathways in DNA oligonucleotide hybridization via transition state analysis


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