DendroPy Users

Hello everyone, I am a new user of Dendropy, especially bioinformatics computation. i have to summary

Download italian movie Neon Indian: Slumlord Rising Download Zip https://t.co/C0u4816mEg eebf2c3492

Hi DendroPy Users, since I 'm new to DendroPy, I would like to know where can I find the data in

Does your original tree have edge lengths? On Monday, October 18, 2021 at 6:26:02 PM UTC-7 Mark

Hello, was this feature eventually incorporated into dendropy? On Tuesday, December 4, 2012 at 11:52:

I'm new to dendropy and I realize this message is almost 10y old. Is there any update? The only

Dear DendroPy Users, I'm trying to truncate the GtDB tree of Bacteria to retain only selected

Are there other models, apart from the HKY model, to generate DNA sequences from trees in dendroPy?

Hi all, I have a Newick tree with multiple lineages, and I need to calculate the frequency of one of

Hi Yan Wong, What I do in these cases is to use a tree iterator as opposed to a tree collection. This

Hmmm, I see, thanks for the email. It has become obvious that this is not a problem with Dendropy,

Thanks so much for this Mark. It's really helpful. I'm a little surprised that others hadn

Hi, I noticed that in the DendroPy interop module, an ete.py script is written for conversion between

Hi There! I apologize in advance- I'm not an advanced python coder. I do at least have a handle

The speed issue of calculation has been solved. I used multiprocessing to parallelize the computation

Dear Jeet, thank you. I'll try to follow this way. I also think such a new function, be it added

Dear Jeet, thank you, it works. Just to add: the third option (probably the easiest one) is to

Hi Jeet and everyone, Is there a dendropy function that outputs topology branch lengths to variance

Thanks. That's just what I needed to know. I guess others might find it useful if it were

As Alexey Morozov notes, you can indeed get the count of nodes through various standard formulae,

I'm trying to use dendropy to "build a tree programmatically" as described in (https://

Things get even stranger when I initialize a tree with a single node. There are now TWO edges! One

Thanks a lot, Jeet, for the fast response. Very helpful! Cheers, Michael On Thursday, September 27,

Rooting an unrooted tree is a change in the model. Rerooting a tree is also a change in the model.

DendroPy will output the metadata in a variety of formats with the proper keywords passed to the

Hello, I'm working on some simulations of reads from genomic data that includes a coalescent

After working through this on paper I found a simple solution: I just have to first re-root the tree

Nevermind! Figured that one out too: from collections import defaultdict from StringIO import

2018-05-07 ========== DendroPy 4.4.0 has been released! - Calculation of birth-death likelihoods. -

That works, thank you for your time! On Monday, January 15, 2018 at 9:25:38 AM UTC-8, Caleb Ji wrote: