Editing scales in Plot Builder

[Helios De Rosario]

I have a problem with editing scales in Plot Builder (Deducer 0.6-3).

This is an example:

I create a subset with the first 100 rows of diamonds:
diam <- diamonds[1:100,]

Then prepare with Plot Builder a plot with geom "point", and "x", "y"
mapped to the X, Y axes, respectively.

Everything ok up to this point. Then I add a continuous x scale, but
when I try to edit it (e.g. to set a log scale) nothing happens. It's
the same if I try a discrete or date scale with other data.

I have also tried to run the Plot Builder via command line, and when I
push the button to edit the x scale in that example, the following
error prompts (in JGR this output does not appear):

java.lang.NullPointerException
at org.rosuda.deducer.plots.LegendPanel.getName(LegendPanel.java:158)
at com.sun.java.swing.plaf.gtk.GTKStyle.getInsets(GTKStyle.java:274)
at javax.swing.plaf.synth.SynthStyle.installDefaults(SynthStyle.java:
896)
at
javax.swing.plaf.synth.SynthLookAndFeel.updateStyle(SynthLookAndFeel.java:
275)
at javax.swing.plaf.synth.SynthPanelUI.updateStyle(SynthPanelUI.java:
70)
at
javax.swing.plaf.synth.SynthPanelUI.installDefaults(SynthPanelUI.java:
57)
at javax.swing.plaf.basic.BasicPanelUI.installUI(BasicPanelUI.java:
39)
at javax.swing.plaf.synth.SynthPanelUI.installUI(SynthPanelUI.java:
37)
at javax.swing.JComponent.setUI(JComponent.java:662)
at javax.swing.JPanel.setUI(JPanel.java:136)
at javax.swing.JPanel.updateUI(JPanel.java:109)
at javax.swing.JPanel.<init>(JPanel.java:69)
at javax.swing.JPanel.<init>(JPanel.java:92)
at javax.swing.JPanel.<init>(JPanel.java:100)
at org.rosuda.deducer.plots.LegendPanel.<init>(LegendPanel.java:41)
at
org.rosuda.deducer.plots.ParamScaleWidget.initAsScale(ParamScaleWidget.java:
107)
at
org.rosuda.deducer.plots.ParamScaleWidget.setModel(ParamScaleWidget.java:
31)
at
org.rosuda.deducer.plots.ParamScaleWidget.<init>(ParamScaleWidget.java:
26)
at
org.rosuda.deducer.plots.ParamScaleLegend.getView(ParamScaleLegend.java:
51)
at
org.rosuda.deducer.plots.DefaultElementView.updatePanel(DefaultElementView.java:
56)
at
org.rosuda.deducer.plots.DefaultElementView.setModel(DefaultElementView.java:
75)
at
org.rosuda.deducer.plots.DefaultElementView.<init>(DefaultElementView.java:
31)
at org.rosuda.deducer.plots.Scale.getView(Scale.java:832)
at
org.rosuda.deducer.plots.PlottingElement.getPanel(PlottingElement.java:
229)
at
org.rosuda.deducer.plots.PlotBuilderSubFrame.setElement(PlotBuilderSubFrame.java:
75)
at
org.rosuda.deducer.plots.PlotBuilder.openLayerSheet(PlotBuilder.java:
467)
at
org.rosuda.deducer.plots.PlotBuilder.actionPerformed(PlotBuilder.java:
1113)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:
1995)
at javax.swing.AbstractButton
$Handler.actionPerformed(AbstractButton.java:2318)
at
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:
387)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:
242)
at
javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:
236)
at
java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:
272)
at
java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:
272)
at java.awt.Component.processMouseEvent(Component.java:6288)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
at java.awt.Component.processEvent(Component.java:6053)
at java.awt.Container.processEvent(Container.java:2041)
at java.awt.Component.dispatchEventImpl(Component.java:4651)
at java.awt.Container.dispatchEventImpl(Container.java:2099)
at java.awt.Component.dispatchEvent(Component.java:4481)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:
4577)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:
4238)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
at java.awt.Container.dispatchEventImpl(Container.java:2085)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4481)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:643)
at java.awt.EventQueue.access$000(EventQueue.java:84)
at java.awt.EventQueue$1.run(EventQueue.java:602)
at java.awt.EventQueue$1.run(EventQueue.java:600)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext
$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.security.AccessControlContext
$1.doIntersectionPrivilege(AccessControlContext.java:98)
at java.awt.EventQueue$2.run(EventQueue.java:616)
at java.awt.EventQueue$2.run(EventQueue.java:614)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext
$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:613)
at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:
269)
at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:
184)
at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:
174)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:
169)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:
161)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at
org.rosuda.deducer.plots.ParamScaleWidget.setModel(ParamScaleWidget.java:
42)
at
org.rosuda.deducer.plots.ParamScaleWidget.<init>(ParamScaleWidget.java:
26)
at
org.rosuda.deducer.plots.ParamScaleLegend.getView(ParamScaleLegend.java:
51)
at
org.rosuda.deducer.plots.DefaultElementView.updatePanel(DefaultElementView.java:
56)
at
org.rosuda.deducer.plots.DefaultElementView.setModel(DefaultElementView.java:
75)
at
org.rosuda.deducer.plots.DefaultElementView.<init>(DefaultElementView.java:
31)
at org.rosuda.deducer.plots.Scale.getView(Scale.java:832)
at
org.rosuda.deducer.plots.PlottingElement.getPanel(PlottingElement.java:
229)
at
org.rosuda.deducer.plots.PlotBuilderSubFrame.setElement(PlotBuilderSubFrame.java:
75)
at
org.rosuda.deducer.plots.PlotBuilder.openLayerSheet(PlotBuilder.java:
467)
at
org.rosuda.deducer.plots.PlotBuilder.actionPerformed(PlotBuilder.java:
1113)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:
1995)
at javax.swing.AbstractButton
$Handler.actionPerformed(AbstractButton.java:2318)
at
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:
387)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:
242)
at
javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:
236)
at
java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:
272)
at
java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:
272)
at java.awt.Component.processMouseEvent(Component.java:6288)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
at java.awt.Component.processEvent(Component.java:6053)
at java.awt.Container.processEvent(Container.java:2041)
at java.awt.Component.dispatchEventImpl(Component.java:4651)
at java.awt.Container.dispatchEventImpl(Container.java:2099)
at java.awt.Component.dispatchEvent(Component.java:4481)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:
4577)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:
4238)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
at java.awt.Container.dispatchEventImpl(Container.java:2085)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4481)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:643)
at java.awt.EventQueue.access$000(EventQueue.java:84)
at java.awt.EventQueue$1.run(EventQueue.java:602)
at java.awt.EventQueue$1.run(EventQueue.java:600)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext
$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.security.AccessControlContext
$1.doIntersectionPrivilege(AccessControlContext.java:98)
at java.awt.EventQueue$2.run(EventQueue.java:616)
at java.awt.EventQueue$2.run(EventQueue.java:614)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext
$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:613)
at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:
269)
at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:
184)
at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:
174)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:
169)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:
161)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

Other operations with the Plot Builder do work, also in the command
line version. Is it a problem of my installation?

sessionInfo():

R version 2.14.2 (2012-02-29)
Platform: i486-pc-linux-gnu (32-bit)

locale:
[1] LC_CTYPE=es_ES.utf8 LC_NUMERIC=C
[3] LC_TIME=es_ES.utf8 LC_COLLATE=es_ES.utf8
[5] LC_MONETARY=es_ES.utf8 LC_MESSAGES=es_ES.utf8
[7] LC_PAPER=es_ES.utf8 LC_NAME=es_ES.utf8
[9] LC_ADDRESS=es_ES.utf8 LC_TELEPHONE=es_ES.utf8
[11] LC_MEASUREMENT=es_ES.utf8 LC_IDENTIFICATION=es_ES.utf8

attached base packages:
[1] grid splines stats graphics grDevices utils
datasets
[8] methods base

other attached packages:
[1] Deducer_0.6-3 plyr_1.5.2 foreign_0.8-49
effects_2.0-12
[5] colorspace_1.1-0 nlme_3.1-103 lattice_0.20-0
multcomp_1.2-6
[9] mvtnorm_0.9-999 car_2.0-10 survival_2.36-12
nnet_7.3-1
[13] MASS_7.3-16 scales_0.2.0 ggplot2_0.9.0
JGR_1.7-9
[17] iplots_1.1-4 JavaGD_0.5-5 rJava_0.9-3

loaded via a namespace (and not attached):
[1] dichromat_1.2-4 digest_0.4.2 memoise_0.1
munsell_0.3
[5] proto_0.3-9.2 RColorBrewer_1.0-2 reshape2_1.2.1
stringr_0.6
[9] tools_2.14.2

[Ian Fellows]

Helios,

I tried to reproduce on may mac, but didn't get the errors you found.
I followed your steps and the attached plot is what was generated.

dev.new()
ggplot() +
geom_point(aes(x = x,y = y),data=diam) +
scale_x_continuous(trans = 'log')

The log scaling is not particularly obvious in this case, but it is
present. Are you producing the same plot on your system?

I also don't get the stack traces that you report. I will try to
reproduce them on a linux machine in the near future. Which ditro are
you using?

Best,
Ian

[Helios De Rosario]

I've tried in a Windows machine and it does work, so it must be an
issue of my installation. (Ubuntu 10.04). Perhaps some problem with
Java? I'll re-install it and try again.

Thanks
Helios

> ...
>
> read more »
>
>  tmp.pdf
> 7KViewDownload

[Helios De Rosario]

No luck with re-installing Java and the packages rJava, JGR, and
Deducer in my Ubuntu 10.04
I used Sun Java6, and the re-installation (following Iurie's
instructions) has changed it by OpenJDK Java 6, but the problem
remains, only some figures change in the error message (I copy it
below).

By the way, re-installing rJava has prompted a pile warnings. I don't
understand them, and don't either know if they have something to do
with the problem I'm reporting. I also copy the output of rJava
installation, just in case:


> install.packages("rJava")
Installing package(s) into ‘/home/helios/R/i486-pc-linux-gnu-library/
2.14’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Loading Tcl/Tk interface ... done
probando la URL 'http://cran.at.r-project.org/src/contrib/
rJava_0.9-3.tar.gz'
Content type 'application/x-gzip' length 537153 bytes (524 Kb)
URL abierta
==================================================
downloaded 524 Kb

* installing *source* package ‘rJava’ ...
** package ‘rJava’ successfully unpacked and MD5 sums checked
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for string.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking whether time.h and sys/time.h may both be included... yes
configure: checking whether gcc -std=gnu99 supports static inline...
yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking Java support in R... present:
interpreter : '/usr/bin/java'
archiver : '/usr/bin/jar'
compiler : '/usr/bin/javac'
header prep.: '/usr/bin/javah'
cpp flags : '-I/usr/lib/jvm/java-6-openjdk/jre/../include'
java libs : '-L/usr/lib/jvm/java-6-openjdk/jre/lib/i386/client -L/
usr/lib/jvm/java-6-openjdk/jre/lib/i386 -L/usr/lib/jvm/java-6-openjdk/
jre/../lib/i386 -L/usr/java/packages/lib/i386 -L/usr/lib/jni -L/lib -L/
usr/lib -ljvm'
checking whether JNI programs can be compiled... yes
checking JNI data types... ok
checking whether JRI should be compiled (autodetect)... yes
checking whether debugging output should be enabled... no
checking whether memory profiling is desired... no
checking whether threads support is requested... no
checking whether callbacks support is requested... no
checking whether JNI cache support is requested... no
checking whether JRI is requested... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating R/zzz.R
config.status: creating src/config.h
=== configuring in jri (/tmp/RtmpAu6S9C/R.INSTALL188334c308ec/rJava/
jri)
configure: running /bin/bash ./configure '--prefix=/usr/local' --
cache-file=/dev/null --srcdir=.
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking whether Java interpreter works... checking whether JNI
programs can be compiled... yes
checking whether JNI programs can be run... yes
checking JNI data types... ok
checking whether Rinterface.h exports R_CStackXXX variables... yes
checking whether Rinterface.h exports R_SignalHandlers... yes
configure: creating ./config.status
config.status: creating src/Makefile
config.status: creating Makefile
config.status: creating run
config.status: creating src/config.h
** libs
gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-6-
openjdk/jre/../include -fpic -O3 -pipe -g -c Rglue.c -o Rglue.o
gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-6-
openjdk/jre/../include -fpic -O3 -pipe -g -c arrayc.c -o
arrayc.o
gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-6-
openjdk/jre/../include -fpic -O3 -pipe -g -c callJNI.c -o
callJNI.o
gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-6-
openjdk/jre/../include -fpic -O3 -pipe -g -c callback.c -o
callback.o
gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-6-
openjdk/jre/../include -fpic -O3 -pipe -g -c fields.c -o
fields.o
gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-6-
openjdk/jre/../include -fpic -O3 -pipe -g -c init.c -o init.o
gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-6-
openjdk/jre/../include -fpic -O3 -pipe -g -c jri_glue.c -o
jri_glue.o
jri_glue.c: In function ‘PushToREXP’:
jri_glue.c:24: warning: cast from pointer to integer of different size
jri_glue.c: In function ‘RReleaseREXP’:
jri_glue.c:52: warning: cast to pointer from integer of different size
gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-6-
openjdk/jre/../include -fpic -O3 -pipe -g -c loader.c -o
loader.o
gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-6-
openjdk/jre/../include -fpic -O3 -pipe -g -c otables.c -o
otables.o
gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-6-
openjdk/jre/../include -fpic -O3 -pipe -g -c rJava.c -o rJava.o
gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-6-
openjdk/jre/../include -fpic -O3 -pipe -g -c tools.c -o tools.o
gcc -std=gnu99 -shared -o rJava.so Rglue.o arrayc.o callJNI.o
callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o
tools.o -L/usr/lib/jvm/java-6-openjdk/jre/lib/i386/client -L/usr/lib/
jvm/java-6-openjdk/jre/lib/i386 -L/usr/lib/jvm/java-6-openjdk/jre/../
lib/i386 -L/usr/java/packages/lib/i386 -L/usr/lib/jni -L/lib -L/usr/
lib -ljvm -L/usr/lib/R/lib -lR
(cd ../jri && make)
make[1]: se ingresa al directorio «/tmp/RtmpAu6S9C/
R.INSTALL188334c308ec/rJava/jri»
make -C src JRI.jar
make[2]: se ingresa al directorio «/tmp/RtmpAu6S9C/
R.INSTALL188334c308ec/rJava/jri/src»
/usr/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../
RBool.java ../RConsoleOutputStream.java ../REXP.java ../
RFactor.java ../RList.java ../RMainLoopCallbacks.java ../
RVector.java ../Rengine.java ../package-info.java
/usr/bin/javah -d . -classpath . org.rosuda.JRI.Rengine
gcc -std=gnu99 -c -o Rengine.o Rengine.c -g -Iinclude -
DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -O3 -pipe -g -I/usr/lib/jvm/java-6-
openjdk/jre/../include -fpic -I/usr/lib/jvm/java-6-openjdk/jre/../
include -I/usr/share/R/include -I/usr/share/R/include
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniParse’:
Rengine.c:121: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniEval’:
Rengine.c:135: warning: cast to pointer from integer of different size
Rengine.c:136: warning: cast to pointer from integer of different size
Rengine.c:159: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniAssign’:
Rengine.c:179: warning: cast to pointer from integer of different size
Rengine.c:180: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniProtect’:
Rengine.c:189: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniRelease’:
Rengine.c:201: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPreserve’:
Rengine.c:207: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPrintValue’:
Rengine.c:213: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniParentEnv’:
Rengine.c:219: warning: cast to pointer from integer of different size
Rengine.c:219: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniFindVar’:
Rengine.c:228: warning: cast to pointer from integer of different size
Rengine.c:228: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniListEnv’:
Rengine.c:234: warning: cast to pointer from integer of different size
Rengine.c:234: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniSpecialObject’:
Rengine.c:241: warning: cast from pointer to integer of different size
Rengine.c:242: warning: cast from pointer to integer of different size
Rengine.c:243: warning: cast from pointer to integer of different size
Rengine.c:244: warning: cast from pointer to integer of different size
Rengine.c:245: warning: cast from pointer to integer of different size
Rengine.c:246: warning: cast from pointer to integer of different size
Rengine.c:247: warning: cast from pointer to integer of different size
Rengine.c:248: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniXrefToJava’:
Rengine.c:256: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniJavaToXref’:
Rengine.c:266: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetString’:
Rengine.c:272: warning: cast to pointer from integer of different size
Rengine.c: In function
‘Java_org_rosuda_JRI_Rengine_rniGetStringArray’:
Rengine.c:279: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetIntArray’:
Rengine.c:285: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetRawArray’:
Rengine.c:291: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetBoolArrayI’:
Rengine.c:297: warning: cast to pointer from integer of different size
Rengine.c: In function
‘Java_org_rosuda_JRI_Rengine_rniGetDoubleArray’:
Rengine.c:303: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetVector’:
Rengine.c:309: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniExpType’:
Rengine.c:315: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutString’:
Rengine.c:335: warning: cast from pointer to integer of different size
Rengine.c: In function
‘Java_org_rosuda_JRI_Rengine_rniPutStringArray’:
Rengine.c:341: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutIntArray’:
Rengine.c:347: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutRawArray’:
Rengine.c:353: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutBoolArrayI’:
Rengine.c:359: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutBoolArray’:
Rengine.c:365: warning: cast from pointer to integer of different size
Rengine.c: In function
‘Java_org_rosuda_JRI_Rengine_rniPutDoubleArray’:
Rengine.c:371: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutVector’:
Rengine.c:377: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetAttr’:
Rengine.c:384: warning: cast to pointer from integer of different size
Rengine.c:386: warning: cast to pointer from integer of different size
Rengine.c:387: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetAttrNames’:
Rengine.c:394: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniSetAttr’:
Rengine.c:426: warning: cast to pointer from integer of different size
Rengine.c:428: warning: cast to pointer from integer of different size
Rengine.c:428: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniInstallSymbol’:
Rengine.c:441: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetSymbolName’:
Rengine.c:447: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniInherits’:
Rengine.c:457: warning: cast to pointer from integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniCons’:
Rengine.c:468: warning: cast to pointer from integer of different size
Rengine.c:468: warning: cast to pointer from integer of different size
Rengine.c:470: warning: cast to pointer from integer of different size
Rengine.c:470: warning: cast to pointer from integer of different size
Rengine.c:472: warning: cast to pointer from integer of different size
Rengine.c:473: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniCAR’:
Rengine.c:480: warning: cast to pointer from integer of different size
Rengine.c:481: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniCDR’:
Rengine.c:490: warning: cast to pointer from integer of different size
Rengine.c:491: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniTAG’:
Rengine.c:500: warning: cast to pointer from integer of different size
Rengine.c:501: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutList’:
Rengine.c:516: warning: cast from pointer to integer of different size
Rengine.c:521: warning: cast to pointer from integer of different size
Rengine.c:526: warning: cast from pointer to integer of different size
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetList’:
Rengine.c:533: warning: cast to pointer from integer of different size
Rengine.c:560: warning: cast from pointer to integer of different size
gcc -std=gnu99 -c -o jri.o jri.c -g -Iinclude -DRIF_HAS_CSTACK -
DRIF_HAS_RSIGHAND -O3 -pipe -g -I/usr/lib/jvm/java-6-openjdk/jre/../
include -fpic -I/usr/lib/jvm/java-6-openjdk/jre/../include -I/usr/
share/R/include -I/usr/share/R/include
jri.c: In function ‘jri_putSEXPLArray’:
jri.c:193: warning: cast from pointer to integer of different size
jri.c: In function ‘jri_getObjectArray’:
jri.c:308: warning: cast from pointer to integer of different size
jri.c: In function ‘jri_getSEXPLArray’:
jri.c:472: warning: cast to pointer from integer of different size
gcc -std=gnu99 -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -
DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -O3 -pipe -g -I/usr/lib/jvm/java-6-
openjdk/jre/../include -fpic -I/usr/lib/jvm/java-6-openjdk/jre/../
include -I/usr/share/R/include -I/usr/share/R/include
gcc -std=gnu99 -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -
DRIF_HAS_RSIGHAND -O3 -pipe -g -I/usr/lib/jvm/java-6-openjdk/jre/../
include -fpic -I/usr/share/R/include -I/usr/share/R/include
gcc -std=gnu99 -c -o globals.o globals.c -g -Iinclude -
DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -O3 -pipe -g -I/usr/lib/jvm/java-6-
openjdk/jre/../include -fpic -I/usr/lib/jvm/java-6-openjdk/jre/../
include
gcc -std=gnu99 -c -o rjava.o rjava.c -g -Iinclude -DRIF_HAS_CSTACK -
DRIF_HAS_RSIGHAND -O3 -pipe -g -I/usr/lib/jvm/java-6-openjdk/jre/../
include -fpic -I/usr/lib/jvm/java-6-openjdk/jre/../include
rjava.c: In function ‘RJava_request_lock’:
rjava.c:22: warning: ignoring return value of ‘write’, declared with
attribute warn_unused_result
rjava.c: In function ‘RJava_clear_lock’:
rjava.c:30: warning: ignoring return value of ‘write’, declared with
attribute warn_unused_result
rjava.c: In function ‘RJava_request_callback’:
rjava.c:39: warning: ignoring return value of ‘write’, declared with
attribute warn_unused_result
rjava.c: In function ‘RJava_init_ctrl’:
rjava.c:51: warning: ignoring return value of ‘write’, declared with
attribute warn_unused_result
rjava.c:52: warning: ignoring return value of ‘read’, declared with
attribute warn_unused_result
gcc -std=gnu99 -o libjri.so Rengine.o jri.o Rcallbacks.o Rinit.o
globals.o rjava.o -shared -L/usr/lib/jvm/java-6-openjdk/jre/lib/i386/
client -L/usr/lib/jvm/java-6-openjdk/jre/lib/i386 -L/usr/lib/jvm/
java-6-openjdk/jre/../lib/i386 -L/usr/java/packages/lib/i386 -L/usr/
lib/jni -L/lib -L/usr/lib -ljvm -L/usr/lib/R/lib -lR
/usr/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../
RBool.java ../RConsoleOutputStream.java ../REXP.java ../
RFactor.java ../RList.java ../RMainLoopCallbacks.java ../
RVector.java ../Rengine.java ../package-info.java
/usr/bin/jar fc JRI.jar org libjri.so
make[2]: se sale del directorio «/tmp/RtmpAu6S9C/R.INSTALL188334c308ec/
rJava/jri/src»
rm -f libjri.so
cp src/libjri.so libjri.so
/usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d
examples examples/rtest.java
Note: examples/rtest.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
/usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d
examples examples/rtest2.java
Note: examples/rtest2.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
make[1]: se sale del directorio «/tmp/RtmpAu6S9C/R.INSTALL188334c308ec/
rJava/jri»
installing via 'install.libs.R' to /home/helios/R/i486-pc-linux-gnu-
library/2.14/rJava
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (rJava)

The downloaded packages are in
‘/tmp/Rtmp06EpVw/downloaded_packages’




These are the lines that are displayed in the shell when I try to edit
the x scale with Plot Builder (very similar to the ones I reported
before, but with different figures):

java.lang.NullPointerException
at org.rosuda.deducer.plots.LegendPanel.getName(LegendPanel.java:158)
at com.sun.java.swing.plaf.gtk.GTKStyle.getInsets(GTKStyle.java:315)
at javax.swing.plaf.synth.SynthStyle.installDefaults(SynthStyle.java:
914)
at
javax.swing.plaf.synth.SynthLookAndFeel.updateStyle(SynthLookAndFeel.java:
284)
at javax.swing.plaf.synth.SynthPanelUI.updateStyle(SynthPanelUI.java:
87)
at
javax.swing.plaf.synth.SynthPanelUI.installDefaults(SynthPanelUI.java:
74)
at javax.swing.plaf.basic.BasicPanelUI.installUI(BasicPanelUI.java:
56)
at javax.swing.plaf.synth.SynthPanelUI.installUI(SynthPanelUI.java:
54)
at javax.swing.JComponent.setUI(JComponent.java:651)
at javax.swing.JPanel.setUI(JPanel.java:153)
at javax.swing.JPanel.updateUI(JPanel.java:126)
at javax.swing.JPanel.<init>(JPanel.java:86)
at javax.swing.JPanel.<init>(JPanel.java:109)
at javax.swing.JPanel.<init>(JPanel.java:117)

2012)
at javax.swing.AbstractButton
$Handler.actionPerformed(AbstractButton.java:2335)
at
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:
404)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:
259)
at
javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:
253)
at
java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:
289)
at
java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:
289)
at java.awt.Component.processMouseEvent(Component.java:6203)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
at java.awt.Component.processEvent(Component.java:5968)
at java.awt.Container.processEvent(Container.java:2105)
at java.awt.Component.dispatchEventImpl(Component.java:4564)
at java.awt.Container.dispatchEventImpl(Container.java:2163)
at java.awt.Component.dispatchEvent(Component.java:4390)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:
4461)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:
4125)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4055)
at java.awt.Container.dispatchEventImpl(Container.java:2149)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4390)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:649)
at java.awt.EventQueue.access$000(EventQueue.java:96)
at java.awt.EventQueue$1.run(EventQueue.java:608)
at java.awt.EventQueue$1.run(EventQueue.java:606)

at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext

$1.doIntersectionPrivilege(AccessControlContext.java:105)
at java.security.AccessControlContext
$1.doIntersectionPrivilege(AccessControlContext.java:116)
at java.awt.EventQueue$2.run(EventQueue.java:622)
at java.awt.EventQueue$2.run(EventQueue.java:620)

at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext

$1.doIntersectionPrivilege(AccessControlContext.java:105)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:619)
at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:
275)
at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:
200)
at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:
190)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:
185)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:
177)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:138)

2012)
at javax.swing.AbstractButton
$Handler.actionPerformed(AbstractButton.java:2335)
at
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:
404)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:
259)
at
javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:
253)
at
java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:
289)
at
java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:
289)
at java.awt.Component.processMouseEvent(Component.java:6203)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
at java.awt.Component.processEvent(Component.java:5968)
at java.awt.Container.processEvent(Container.java:2105)
at java.awt.Component.dispatchEventImpl(Component.java:4564)
at java.awt.Container.dispatchEventImpl(Container.java:2163)
at java.awt.Component.dispatchEvent(Component.java:4390)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:
4461)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:
4125)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4055)
at java.awt.Container.dispatchEventImpl(Container.java:2149)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4390)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:649)
at java.awt.EventQueue.access$000(EventQueue.java:96)
at java.awt.EventQueue$1.run(EventQueue.java:608)
at java.awt.EventQueue$1.run(EventQueue.java:606)

at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext

$1.doIntersectionPrivilege(AccessControlContext.java:105)
at java.security.AccessControlContext
$1.doIntersectionPrivilege(AccessControlContext.java:116)
at java.awt.EventQueue$2.run(EventQueue.java:622)
at java.awt.EventQueue$2.run(EventQueue.java:620)

at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext

$1.doIntersectionPrivilege(AccessControlContext.java:105)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:619)
at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:
275)
at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:
200)
at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:
190)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:
185)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:
177)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:138)

[Ian Fellows]

This may just be a GTK-swing particularity. I've made some changes
which may fix the issue, though I have not tried them on a linux
system. These will be on the dev server in a few hours.

Ian

p.s. Sorry everyone for the long delay in answers, I've been neck deep
in research.

[mandy]

I have the same problem. It works fine if I sudo run R, but as a
normal user I get the same exception. Work on Linux 11.10.

> > Rengine.c:219:...
>
> Erfahren Sie mehr »