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Monica Messina
10.03.16
GeneChip® Human Transcriptome Array 2.0
Dear Cheng, we would like to use the HTA arrays. Is it possible to analyze HTA data by dChip software
ungelesen,
GeneChip® Human Transcriptome Array 2.0
Dear Cheng, we would like to use the HTA arrays. Is it possible to analyze HTA data by dChip software
10.03.16
wingtec
25.06.15
volcano plots?
Can someone tell me if dChip can make volcano plots? Thanks much Wing
ungelesen,
volcano plots?
Can someone tell me if dChip can make volcano plots? Thanks much Wing
25.06.15
Charles Mullighan
, …
Dee Cronin Fenton
8
25.08.14
Cytoscan HD array
Dear Cheng, I am using dChip for microRNA analyses. I have loaded R but the link on the dChip webpage
ungelesen,
Cytoscan HD array
Dear Cheng, I am using dChip for microRNA analyses. I have loaded R but the link on the dChip webpage
25.08.14
eajanssen
2
13.02.13
CSv files for Illumina Human-6 v3 Expression BeadChip
Dear Cheng Li, Currently I allways get an error message if I want to open "classify samples
ungelesen,
CSv files for Illumina Human-6 v3 Expression BeadChip
Dear Cheng Li, Currently I allways get an error message if I want to open "classify samples
13.02.13
greenhand
2
03.01.13
information file
Dear Cheng, One more question, can dChip export the original expression data with annotation or it
ungelesen,
information file
Dear Cheng, One more question, can dChip export the original expression data with annotation or it
03.01.13
Jai Prakash Mehta
22.10.12
CDF for Bovine Gene ST array (dCHIP not accepting PGF file)
Hi Cheng, I am working on Bovine Gene ST 1.0 arrays. dCHIP is not accepting pgf. Error: Cannot find
ungelesen,
CDF for Bovine Gene ST array (dCHIP not accepting PGF file)
Hi Cheng, I am working on Bovine Gene ST 1.0 arrays. dCHIP is not accepting pgf. Error: Cannot find
22.10.12
Xin Lu
,
Cheng Li
2
14.08.12
truncate to 1 before log2 transform while loading data?
Xin, The option is for raw expression values and therefore not application to values < 1. You may
ungelesen,
truncate to 1 before log2 transform while loading data?
Xin, The option is for raw expression values and therefore not application to values < 1. You may
14.08.12
wingtec
26.07.12
can windows 64 bit run dCHip 32bit versions
Hi all, I wonder if anyone could tell me if my new Windows 7 at 64 bit can run older version of dChip
ungelesen,
can windows 64 bit run dCHip 32bit versions
Hi all, I wonder if anyone could tell me if my new Windows 7 at 64 bit can run older version of dChip
26.07.12
Hae-Won Chung
,
Cheng Li
3
24.07.12
New gene information file does not work!(MOE403A)
Thanks Cheng. It's perfect. On Tuesday, July 24, 2012 11:39:15 AM UTC-5, Cheng Li wrote: Hae-Won,
ungelesen,
New gene information file does not work!(MOE403A)
Thanks Cheng. It's perfect. On Tuesday, July 24, 2012 11:39:15 AM UTC-5, Cheng Li wrote: Hae-Won,
24.07.12
Dee Cronin Fenton
12.07.12
dChip on a laptop & problems with R
Hi Cheng & dChip users! I am using dChip for miRNA profiling analyses. I first use ANOVA, which
ungelesen,
dChip on a laptop & problems with R
Hi Cheng & dChip users! I am using dChip for miRNA profiling analyses. I first use ANOVA, which
12.07.12
Deeksha
05.07.12
Re : normalization and filtering through dchip
Hi I am done with the normalization and filtering part and now i want to export the expression values
ungelesen,
Re : normalization and filtering through dchip
Hi I am done with the normalization and filtering part and now i want to export the expression values
05.07.12
Deeksha
, …
Jai Prakash Mehta
4
04.07.12
Re : Filtering of data
Deeksha i think what u are looking for is exporting the expression values too. go to Tools ==>
ungelesen,
Re : Filtering of data
Deeksha i think what u are looking for is exporting the expression values too. go to Tools ==>
04.07.12
Eric Flores
,
simon
2
28.06.12
Selection of gene expression analysis and data mining software
Hi all and Cheng, For some reason, we have to dig out old expression chip HG U95A. When I opened
ungelesen,
Selection of gene expression analysis and data mining software
Hi all and Cheng, For some reason, we have to dig out old expression chip HG U95A. When I opened
28.06.12
ccye...@gmail.com
,
Cheng Li
2
19.06.12
Combined different GEO data
Yen, No. See Item 7 (within chip-type standardization) at this link: http://biosun1.harvard.edu/
ungelesen,
Combined different GEO data
Yen, No. See Item 7 (within chip-type standardization) at this link: http://biosun1.harvard.edu/
19.06.12
majed
07.05.12
failing the Chr analysis sauit softwear QC
i am working on Cytoscan array, in each experiment i have failed samples in QC check and some passed
ungelesen,
failing the Chr analysis sauit softwear QC
i am working on Cytoscan array, in each experiment i have failed samples in QC check and some passed
07.05.12
RDR
11.04.12
Export gene list
How can I export the list of genes from "hot spots" in the chromosome view which was
ungelesen,
Export gene list
How can I export the list of genes from "hot spots" in the chromosome view which was
11.04.12
AGH
02.04.12
dChip message: Not a CDF file or not in text format
Hello, I'm trying to open a group of Affymetrix HG-U219 arrays and I'm selecting a CDF file
ungelesen,
dChip message: Not a CDF file or not in text format
Hello, I'm trying to open a group of Affymetrix HG-U219 arrays and I'm selecting a CDF file
02.04.12
ccye...@gmail.com
, …
Cheng Li
3
21.02.12
Cannot read GSE file
Yen, We don't have an updated dchip to handle the new GO files. You may analyze your gene lists,
ungelesen,
Cannot read GSE file
Yen, We don't have an updated dchip to handle the new GO files. You may analyze your gene lists,
21.02.12
Cheng Li
18.01.12
Running dChip in compatibility mode of Windows 7
日期: January 18, 2012 1:25:01 PM EST 收件人: Cheng Li <lch...@gmail.com> So far it is working
ungelesen,
Running dChip in compatibility mode of Windows 7
日期: January 18, 2012 1:25:01 PM EST 收件人: Cheng Li <lch...@gmail.com> So far it is working
18.01.12
AP
,
Jai Prakash Mehta
4
06.12.11
displaying gene symbols not gene names in heatmaps
OK it worked!...I uploaded the modified .xls file for others if they find it useful too at http://www
ungelesen,
displaying gene symbols not gene names in heatmaps
OK it worked!...I uploaded the modified .xls file for others if they find it useful too at http://www
06.12.11
xiaokuan
,
Cheng Li
2
02.12.11
how to read SNP CEL files without matched genetype call files (TXT file)
Xiaokuan, Please see the note [V5/29/06+] here: http://biosun1.harvard.edu/complab/dchip/snp.htm#
ungelesen,
how to read SNP CEL files without matched genetype call files (TXT file)
Xiaokuan, Please see the note [V5/29/06+] here: http://biosun1.harvard.edu/complab/dchip/snp.htm#
02.12.11
Vassilios Bezzerides
,
Cheng Li
4
19.11.11
Difficulty with loading Rat ST 1.0 cdf files
Hi Vassilios, Please see this link for gene info file for ST arrays: http://sites.google.com/site/
ungelesen,
Difficulty with loading Rat ST 1.0 cdf files
Hi Vassilios, Please see this link for gene info file for ST arrays: http://sites.google.com/site/
19.11.11
joshua_l
,
Cheng Li
3
18.11.11
Problem loading hg19 refGene/fefFlat file
Hi Cheng, Thank you for the updated version, and loading the refGene/refFlat file is fine. However,
ungelesen,
Problem loading hg19 refGene/fefFlat file
Hi Cheng, Thank you for the updated version, and loading the refGene/refFlat file is fine. However,
18.11.11
SGTC_Julie
,
顏厥全
2
15.11.11
can dChip run on Windows 7?
Sure!! Yen CC 2011/11/16 SGTC_Julie <julie.w...@gmail.com> Can dChip run on Windows 7? --
ungelesen,
can dChip run on Windows 7?
Sure!! Yen CC 2011/11/16 SGTC_Julie <julie.w...@gmail.com> Can dChip run on Windows 7? --
15.11.11
sigrid.rouam
,
Cheng Li
3
02.11.11
loading CEL files in dChip
Hi Cheng, Thank you for your reply. I tried to add the .txt suffix but I got a new error message (see
ungelesen,
loading CEL files in dChip
Hi Cheng, Thank you for your reply. I tried to add the .txt suffix but I got a new error message (see
02.11.11
Tamil Azhagan
,
Cheng Li
2
01.11.11
Gene Symbol in different Genome builds matching with SNP array data
Tamil, Can you give specific steps and examples that lead to the difference? eg which files or
ungelesen,
Gene Symbol in different Genome builds matching with SNP array data
Tamil, Can you give specific steps and examples that lead to the difference? eg which files or
01.11.11
Kathy
25.10.11
Question about LOH data(import to GISTIC) from dChip
Hi! Dr. Li: I have visited your CaSNP database. It provided very useful information. I have a
ungelesen,
Question about LOH data(import to GISTIC) from dChip
Hi! Dr. Li: I have visited your CaSNP database. It provided very useful information. I have a
25.10.11
Subarna Sinha
14.10.11
Copy number generation from SNP arrays
Dear Cheng, I have a few questions about using dChip for inferring copy number from Affymetrix SNP6
ungelesen,
Copy number generation from SNP arrays
Dear Cheng, I have a few questions about using dChip for inferring copy number from Affymetrix SNP6
14.10.11
Laura
10.10.11
Negative expression values on Affy array
Hi, I have questions about how to use (and perhaps whether to use) negative expression values
ungelesen,
Negative expression values on Affy array
Hi, I have questions about how to use (and perhaps whether to use) negative expression values
10.10.11
jai
16.09.11
Alternate Splicing: Want to know a bit of stats behind that.
Hi, I am using Human exon array to find alternate splicing. Everything is going perfecty. And I am
ungelesen,
Alternate Splicing: Want to know a bit of stats behind that.
Hi, I am using Human exon array to find alternate splicing. Everything is going perfecty. And I am
16.09.11