More Manual Pages - dChip Software

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Page name	Author	Size	Created	Edited

Introduction, installation and user support	Cheng Li	26Bytes	Jan 9 2009	Jan 19 2009
Introduction to dChip	Cheng Li	4.5KB	Jan 19 2009	Feb 25 2009
dChip references	Cheng Li	6.7KB	Jan 22 2009	Apr 10 2009
Selected dChip applications	Cheng Li	5.7KB	Jan 22 2009	Jan 22 2009
dChip tutorials	Cheng Li	2.5KB	Feb 25 2009	Aug 25 2009
Very quick tutorial	Cheng Li	5.4KB	Feb 25 2009	Feb 25 2009
Tutorial using leukemia data by Armstrong et al.	Cheng Li	6.1KB	Feb 25 2009	Feb 25 2009
Downloading dChip software	Cheng Li	2.8KB	Dec 28 2008	Dec 28 2008
64 bit (x64) version	Cheng Li	859Bytes	Feb 25 2009	Mar 9 2009
Running dChip on Mac or Linux	Cheng Li	4.5KB	Dec 28 2008	Jan 9 2009
dChip command line version on Linux	Cheng Li	9.7KB	Dec 29 2008	Dec 29 2008
Memory requirement	Cheng Li	1.5KB	Jan 9 2009	Jan 9 2009
User group and posting guidelines	Cheng Li	2.4KB	Dec 28 2008	Apr 13 2009
Trouble-shooting tips	Cheng Li	2.2KB	Jan 9 2009	Jan 9 2009
Source code and development	Cheng Li	2.8KB	Jan 19 2009	Jan 19 2009
unpublished changes by Cheng Li - view and edit
Gene information file	Cheng Li	130Bytes	Jan 9 2009	Jan 9 2009
Information file for Gene ST arrays	Cheng Li	1.6KB	Jan 9 2009	Jan 10 2009
Exon array data analysis	Cheng Li	26Bytes	Jan 19 2009	Jan 19 2009
Process exon array data	Cheng Li	2.1KB	Jan 19 2009	Feb 21 2009
View exon array data along chromosome	Cheng Li	2.7KB	Jan 19 2009	Jan 19 2009
Convert exon array data to HG-U133 gene level data	Cheng Li	1.4KB	Jan 19 2009	Mar 12 2009
Alternative splicing analysis	Cheng Li	4.1KB	Feb 21 2009	Mar 12 2009
Process tiling sub-array	Cheng Li	3.6KB	Jan 19 2009	Jan 19 2009
Gene ST array	Cheng Li	1.2KB	Jan 19 2009	Jul 13 2009
Automate dChip functions	Cheng Li	3.2KB	Jan 22 2009	Jan 24 2009
Interface with the R software	Cheng Li	5.3KB	Jan 27 2009	Jul 14 2009
SNP array LOH and copy number analysis	Cheng Li	169Bytes	Jan 15 2009	Feb 26 2009
Copy number in paired or unpaired tumors	Cheng Li	884Bytes	Jan 13 2009	Jan 13 2009
SNP information file	Cheng Li	3.0KB	Feb 16 2009	Feb 16 2009
Adjust batch and individual effect	Cheng Li	2.3KB	Jan 15 2009	Jan 15 2009
Trimmed analysis	Cheng Li	4.9KB	Feb 26 2009	Feb 26 2009
Copy number summary plot	Cheng Li	2.9KB	Feb 26 2009	Feb 26 2009
Export data in Wiggle format	Cheng Li	1.8KB	Feb 26 2009	Feb 26 2009
Major copy proportion analysis	Cheng Li	1.8KB	Feb 26 2009	Feb 26 2009
Show LOH in the copy number view	Cheng Li	1.4KB	Feb 26 2009	Feb 26 2009
UCLA microarray courses	Cheng Li	5.9KB	Feb 25 2009	May 30 2009
Combine sub-arrays for analysis	Cheng Li	6.2KB	Mar 11 2009	Mar 11 2009
being edited by Samir Amin
Downloadable information files	Cheng Li	308Bytes	Mar 30 2009	Mar 30 2009
Find a refGene or chromosome position	Cheng Li	1.2KB	Apr 2 2009	Apr 2 2009
microRNA analysis	Cheng Li	1.5KB	Apr 9 2009	Apr 9 2009
Percentile fold change filtering	Cheng Li	1.5KB	Apr 12 2009	Apr 12 2009
Save and load chromosome analysis results	Cheng Li	911Bytes	Apr 6 2009	Apr 6 2009
View probe set data of all arrays	Cheng Li	947Bytes	Apr 9 2009	Apr 9 2009

dChip tutorials	Aug 25
Interface with the R software	Jul 14
Gene ST array	Jul 13
UCLA microarray courses	May 30
User group and posting guidelines	Apr 13
TALL_region_inferred_copyno.txt	Apr 13
Percentile fold change filtering	Apr 12
dChip references	Apr 10
View probe set data of all arrays	Apr 9
image007.png	Apr 9