Affy 500k
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DchipuserSpain
Aug 28, 2009, 4:15:01 AM8/28/09
to dChip Software, paola...@juntadeandalucia.es
Dear Dr. Li,
I am a new user and I hope you can help me. I have 12 unpaired samples
(tumor) aCGH with Affy 500K and I need to compare them with Hapmap (as
control). Could you please show me the basic steps I should follow in
order to do this analysis. Thank you very much.
Kind regards,
Carolina.
I am a new user and I hope you can help me. I have 12 unpaired samples
(tumor) aCGH with Affy 500K and I need to compare them with Hapmap (as
control). Could you please show me the basic steps I should follow in
order to do this analysis. Thank you very much.
Kind regards,
Carolina.
Cheng Li
Aug 28, 2009, 11:03:42 AM8/28/09
to dchip-s...@googlegroups.com, paola...@juntadeandalucia.es
Carolina,
You may download the Hapmap 500k samples to combine with your data,
but due to batch effect it's better to analyze your data by itself.
These two links may help:
http://www.dchip.org/copy.htm#copy_number
http://groups.google.com/group/dchip-software/web/trimmed-analysis
Cheng
You may download the Hapmap 500k samples to combine with your data,
but due to batch effect it's better to analyze your data by itself.
These two links may help:
http://www.dchip.org/copy.htm#copy_number
http://groups.google.com/group/dchip-software/web/trimmed-analysis
Cheng
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