SNP analysis

[genbio64]

Can someone tell me what cdf file is needed for Affy SNP 6.0 analysis?
I have been attempting to use the cdf file from the NetAffx site but
dChip will not recognize it.

[Cheng Li]

genbio64,

What is the CDF file name you are using? Can you copy the dChip error
message?

Cheng

[genbio64]

I am using the GenomeWideSNP_6.Full.cdf. The error message is:

Converting CDF file C:\Documents and Settings\aabecklofn\My Documents
\Work\Snowman\Affy\GenomeWideSNP_6.cdf into binary format for faster
access...
Line 0
Error: not a CDF file

[Cheng Li]

genbio64,

Can you try the latest dChip:
http://biosun1.harvard.edu/~cli/dchip.exe