Leighton,
Follow the note [V3/24/08+] at this page:
http://groups.google.com/group/dchip-software/web/convert-exon-array-data-to-hg-u133-gene-level-data
Put the file u133_to_exon_mapping.xls at the working directory, and specify it as the gene list file.
Cheng
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