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Message from discussion Making networks with my own list of proteins
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giovanni scardoni  
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 More options Jul 1 2012, 5:27 am
From: giovanni scardoni <giovanni.scard...@gmail.com>
Date: Sun, 1 Jul 2012 11:27:16 +0200
Local: Sun, Jul 1 2012 5:27 am
Subject: Re: [cytoscape-helpdesk] Making networks with my own list of proteins
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Dear Gun,
here, at the Center for BioMedical Computing, we collected a ppi network of
more than 12.000 human proteins and 180.000 interactions.
With the beta-version of our Pesca plug-in we can extract the subnetwork
from your list of proteins.
If it can help, let me know and we will produce your network!
Giovanni

2012/6/13 Gun <gunt...@gmail.com>

> Hello,
> I'm a new user of Cytoscape.
> I'm trying to make a network with my proteins (about 350 different
> proteins from my experiment). Using PSICQUICUniversalClient, I wanted to
> make the networks. After putting all my proteins and starting  the process,
> I got a results with more than 2000 nodes and 8000 edges from STRING
> with PSICQUICUniversalClient plugin. Actually, I wanted to make a network
> only with my proteins, so I expected less than 350 of nodes. (I tried
> STRING webserver and it made correctly.)
> I wonder what is wrong with my process? (I tried both query modes. Both
> showed the same results.)
> Please let me know if anyone has the solution.
> Thanks,
> Gun

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--
Giovanni Scardoni
The Center for BioMedical Computing (CBMC)
www.cbmc.it
University of Verona
Strada le Grazie, 15 -37134
Verona -Italy

 
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