I am new to Cytoscape and am interested in learning more about python
scripting. I can create nodes and edges. But, how do I create and
alter attributes, focus and zoom the view, set and apply filters, and
alter selections?
Also, are most people storing data in physical files rather than a
relational database?
On Sat, Oct 24, 2009 at 4:09 AM, David Epstein <david...@umich.edu> wrote:
> Hi everyone,
> I am new to Cytoscape and am interested in learning more about python
> scripting. I can create nodes and edges. But, how do I create and
> alter attributes, focus and zoom the view, set and apply filters, and
> alter selections?
> Also, are most people storing data in physical files rather than a
> relational database?
Hi.
In general, Cytoscape Scripting feature uses JVM implementation of
scripting languages, such as Jython, JRuby, or Rhino. You can
directly access Cytoscape public Java API from scripting languages:
> I am new to Cytoscape and am interested in learning more about python
> scripting. I can create nodes and edges. But, how do I create and
> alter attributes, focus and zoom the view, set and apply filters, and
> alter selections?
> Also, are most people storing data in physical files rather than a
> relational database?
Thank you for your earlier response. I'm looking through the javadocs.
Are there more example scripts online or available besides those
listed at the site:
> Hi.
> In general, Cytoscape Scripting feature uses JVM implementation of
> scripting languages, such as Jython, JRuby, or Rhino. You can
> directly access Cytoscape public Java API from scripting languages:
|
