Highlighting subtrees

[vladv]

Hi, I am trying to figure out how to visualize subtrees in a
hierarchical dataset (with some cross-linking nodes).

More specifically, I would like to be able to click on a node and be
able to select all of its children and grandchildren and great-
grandchildren, etc.

A similar action is implemented in the ^6 keystroke (first neighbors
of selected nodes).
However, this ignores the directionality of the edges!
How can I faithfully traverse a directional network (which Cytoscape
creates by design)?

Thanks in advance for anybody's help/insights!

Vlad

[vladv]

It has been a while. Does nobody have any suggestions for my query?

Vlad

[piet molenaar]

To my knowledge there is no plugin that does specifically what you want, but you might want to try the ShortestPath or the NetworkAnalyzer plugin...
Other than that I think that this is something that should be done programmatically.
Cheers,
Piet

On Sun, Jan 17, 2010 at 10:48 PM, vladv <vlad...@gmail.com> wrote:

It has been a while.  Does nobody have any suggestions for my query?

Vlad

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Piet Molenaar
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Department of Human Genetics, M1-131
Academic Medical Center
University of Amsterdam
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