Discussions - cytoscape-discuss

	Xxx Sexy hot lady’s aviation us Indian Pakistani Chinese USA Indonesian Malaysian Singapore Russian photos
	Xxx Sexy hot lady’s aviation us Indian Pakistani Chinese USA Indonesian Malaysian Singapore Russian photos [link] By gfghfghfgh - Nov 20 - 1 new of 1 message

	cytoscape wiki
	Hi Everyone, Just a quick note that the Cytoscape Wiki is back in action. You can follow the various links on the home page, or go directly to the root of the wiki here: [link] If you notice any links still pointing to the old installation just drop me a line and I will fix them.... more » By Mike Smoot - Nov 18 - 1 new of 1 message

	Problems adding plugin as a jar
	Hi all, I'm so sorry to have to write so much times on this forum, but I have to complete a work for the end of my stage and I found that your answers are speeding up my work deleting all problems with my inexperience with Cytoscape. Well, I finally complete a first part of my work creating a Graph from... more » By Franktwis - Nov 16 - 7 new of 7 messages

Display graph (net) in a window to visualize it with Eclipse

Hi all, I'm new of this forum and for Cytoscape programming. I'm developing a plugin that create a net and visualize it using datas taken from an excel file. The code open excel files and use functions like: Cytoscape.getCyNode("yellow", true); cyNetwork.addNode(node0); to build the net. Now, I followed instructions to add a Visual Style including in my... more »

By Franktwis - Nov 15 - 3 new of 3 messages

	How to export network graph as image using cytoscape without GUI
	Cytoscape 2.6 has a headless mode but does not really support it. Cytoscape 3.0 is promised to support this way but the exporter is not implemented yet (from the subversion revision 18418) , I just can't wait. (And 3.0 is somehow complicated). After hours of deeping into the source of cytoscape,... more » By fengbo.xie@gmail.com - Nov 14 - 1 new of 1 message

	Find a node inside a net with its name only
	I don't exactly know what you want to do, but you may just iterate over all the nodes: Cytoscape.getCurrentNetwork(). getNodeIndicesArray() By Gang Su - Nov 13 - 1 new of 1 message

	Server down?
	HI all, since 4-5 days ago, I'm trying to read pages of plugin tutorial but I retrieve always a Internal Server Error. What's happening? When will be restored the service? thanks By Franktwis - Nov 9 - 8 new of 8 messages

	PSICQUIC Universal Client Test Release
	Hi. Here is the alpha version of PSICQUIC Universal client for Cytoscape. [link] PSICQUIC is a standardized web service for molecular interaction databases. Major interaction data providers are involving this project and you can search latest datasets from multiple databases by... more » By Keiichiro Ono - Nov 6 - 1 new of 1 message

	What does an edge mean?
	Am new to Cytoscape.... Taking for example a protein-protein interaction network created from multiple databases, If two nodes are connected by two edges what does this mean? Does it mean that there are 2 separate experiments to supporting the interaction? or does it mean that there are 2 separate data sources (which in... more » By Martin MacGuill - Nov 6 - 4 new of 4 messages

	Cytoscape Tutorial Video for Users and Developers
	Hi. We are planning to make some tutorial video for both users and developers something like the following: For Users: [link] For Developers: [link] Please let me know if you have any comments. Answers for the following question is very helpful: - What kind of information/tutorial do you need?... more » By Keiichiro Ono - Nov 3 - 3 new of 3 messages