You can bundle your dependencies in your app JAR by adding the following snippet to your pom.xml:
<build>
<plugins>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<version>${maven-bundle-plugin.version}</version>
<configuration>
<instructions>
...
<Embed-Dependency>commons-math;groupId=org.apache.commons;inline=true</Embed-Dependency>
<Import-Package>*;resolution:=optional</Import-Package>
...
</instructions>
</configuration>
</plugin>
</plugins>
</build>
The other alternative is to use Bnd to wrap commons-math as an OSGi bundle and distribute that with your app bundle. Unfortunately, the App Store doesn't currently support multi-bundle apps yet, so you wouldn't be able to distribute your app through that channel. Embedding the dependency as described above is probably the best thing to do for now.
Hope this helps,
Jason