Cytoscape IDE 0.2.2 for Eclipse 3.5 Galileo Released
6 views
Skip to first unread message
Keiichiro Ono
Oct 5, 2009, 4:31:53 PM10/5/09
to cytoscap...@googlegroups.com, cytostaff
Hi everyone.
Cytoscape IDE for Eclipse Galileo (3.5) is available now:
http://chianti.ucsd.edu/~kono/data/cyide/
This is a set of Eclipse plugins required for Cytoscape 3 development.
From this version, you need Java 6.
Updated document is available here:
http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse/CoreDevelopment
Please let me know if you find any problems.
Thanks.
Kei
--
Keiichiro Ono ko...@ucsd.edu
Cytoscape Core Developer Team: http://www.cytoscape.org/
UCSD School of Medicine Trey Ideker Lab: http://chianti.ucsd.edu/idekerlab/
MINDOG
Oct 21, 2009, 5:08:56 AM10/21/09
to cytoscape-discuss
Hello,
Then i try to install this plugin i get error:
Here are the details:
Cannot complete the install because one or more required items could
not be found.
Software being installed: Cytoscape IDE for Eclipse 3.5 0.2.2
(org.cytoscape.ide.eclipse.feature.group 0.2.2)
Missing requirement: Maven POM Editor (Optional) 0.9.8.200905041414
(org.maven.ide.eclipse.editor.feature.feature.group
0.9.8.200905041414) requires 'org.eclipse.zest.core 0.0.0' but it
could not be found
Cannot satisfy dependency:
From: Cytoscape IDE for Eclipse 3.5 0.2.2
(org.cytoscape.ide.eclipse.feature.group 0.2.2)
To: org.maven.ide.eclipse.editor.feature.feature.group
[0.9.8.200905041414]
I use: Windows XP
Any suggestions?
thanks.
Mindaugas
Then i try to install this plugin i get error:
Here are the details:
Cannot complete the install because one or more required items could
not be found.
Software being installed: Cytoscape IDE for Eclipse 3.5 0.2.2
(org.cytoscape.ide.eclipse.feature.group 0.2.2)
Missing requirement: Maven POM Editor (Optional) 0.9.8.200905041414
(org.maven.ide.eclipse.editor.feature.feature.group
0.9.8.200905041414) requires 'org.eclipse.zest.core 0.0.0' but it
could not be found
Cannot satisfy dependency:
From: Cytoscape IDE for Eclipse 3.5 0.2.2
(org.cytoscape.ide.eclipse.feature.group 0.2.2)
To: org.maven.ide.eclipse.editor.feature.feature.group
[0.9.8.200905041414]
I use: Windows XP
Any suggestions?
thanks.
Mindaugas
Fengbo Xie
Oct 27, 2009, 11:23:39 AM10/27/09
to cytoscape-discuss
Since I can't install cytoscape IDE with all dependencies
automatically, I installed them manually one by one.
But the subversion JavaHL I installed is 1.6.6, while the required one
is 1.6.5, so I got the following error:
Cannot complete the install because one or more required items could
not be found.
Software being installed: Cytoscape IDE for Eclipse 3.5 0.2.2
(org.cytoscape.ide.eclipse.feature.group 0.2.2)
Missing requirement for filter (&(osgi.os=win32)(osgi.arch=x86)):
Subversion JavaHL Native Library Adapter (Required) 1.6.5
(org.tigris.subversion.clientadapter.javahl.feature.feature.group
1.6.5) requires 'org.tigris.subversion.clientadapter.javahl.win32
[1.6.5]' but it could not be found
[1.6.5]
On Oct 6, 4:31 am, Keiichiro Ono <kei...@gmail.com> wrote:
> Hi everyone.
>
> CytoscapeIDEfor Eclipse Galileo (3.5) is available now:
>
> http://chianti.ucsd.edu/~kono/data/cyide/
>
> This is a set of Eclipse plugins required forCytoscape3 development.
>
> CytoscapeCore Developer Team:http://www.cytoscape.org/
automatically, I installed them manually one by one.
But the subversion JavaHL I installed is 1.6.6, while the required one
is 1.6.5, so I got the following error:
Cannot complete the install because one or more required items could
not be found.
Software being installed: Cytoscape IDE for Eclipse 3.5 0.2.2
(org.cytoscape.ide.eclipse.feature.group 0.2.2)
Subversion JavaHL Native Library Adapter (Required) 1.6.5
(org.tigris.subversion.clientadapter.javahl.feature.feature.group
1.6.5) requires 'org.tigris.subversion.clientadapter.javahl.win32
[1.6.5]' but it could not be found
Cannot satisfy dependency:
From: Cytoscape IDE for Eclipse 3.5 0.2.2
(org.cytoscape.ide.eclipse.feature.group 0.2.2)
To:
org.tigris.subversion.clientadapter.javahl.feature.feature.group
From: Cytoscape IDE for Eclipse 3.5 0.2.2
(org.cytoscape.ide.eclipse.feature.group 0.2.2)
To:
[1.6.5]
On Oct 6, 4:31 am, Keiichiro Ono <kei...@gmail.com> wrote:
> Hi everyone.
>
> CytoscapeIDEfor Eclipse Galileo (3.5) is available now:
>
> http://chianti.ucsd.edu/~kono/data/cyide/
>
> This is a set of Eclipse plugins required forCytoscape3 development.
> From this version, you need Java 6.
>
> Updated document is available here:
>
> http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse/CoreD...
>
> Updated document is available here:
>
>
> Please let me know if you find any problems.
>
> Thanks.
> Kei
>
> --
> Keiichiro Ono k...@ucsd.edu
> Please let me know if you find any problems.
>
> Thanks.
> Kei
>
> --
>
> CytoscapeCore Developer Team:http://www.cytoscape.org/
Keiichiro Ono
Oct 27, 2009, 5:54:00 PM10/27/09
to cytoscap...@googlegroups.com
Hi.
I've tested on Mac and looks everything works fine. It looks like a
Windows dependent problem. I'll try on a Windows machine and test it
again.
Sorry for the trouble.
Kei
2009/10/27 Fengbo Xie <fengb...@gmail.com>:
--
Keiichiro Ono ko...@ucsd.edu
Cytoscape Core Developer Team: http://www.cytoscape.org/
I've tested on Mac and looks everything works fine. It looks like a
Windows dependent problem. I'll try on a Windows machine and test it
again.
Sorry for the trouble.
Kei
2009/10/27 Fengbo Xie <fengb...@gmail.com>:
Keiichiro Ono ko...@ucsd.edu
Cytoscape Core Developer Team: http://www.cytoscape.org/
Keiichiro Ono
Oct 27, 2009, 8:03:19 PM10/27/09
to cytoscap...@googlegroups.com
So far it's only tested on Mac, but the new Developer's document for
Eclipse users has been updated:
http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse
http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse/CoreDevelopment
http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse/PluginDevelopment
If you have any questions, please let me know.
Kei
2009/10/27 Keiichiro Ono <kei...@gmail.com>:
Eclipse users has been updated:
http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse
http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse/CoreDevelopment
http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse/PluginDevelopment
If you have any questions, please let me know.
Kei
2009/10/27 Keiichiro Ono <kei...@gmail.com>:
Keiichiro Ono
Oct 29, 2009, 11:39:52 AM10/29/09
to cytoscap...@googlegroups.com
Hi.
The new version of Cytoscape IDE confirmed to work on Windows, but
somehow I cannot see the package tree from Eclipse. Please UNCHECK
"Group items by category" and select Cytoscape IDE only to install the
new version.
The new version of Cytoscape IDE confirmed to work on Windows, but
somehow I cannot see the package tree from Eclipse. Please UNCHECK
"Group items by category" and select Cytoscape IDE only to install the
new version.
Mindaugas Razbadauskas
Nov 2, 2009, 5:09:40 AM11/2/09
to cytoscap...@googlegroups.com
Thank you for tutorials,
But for now this pages are not working :)
Internal Server Error
The server encountered an internal error or misconfiguration and was unable to complete your request.Please contact the server administrator, or webmaster and inform them of the time the error occurred, and anything you might have done that may have caused the error.
More information about this error may be available in the server error log.
Maital Ashkenazi
Nov 2, 2009, 5:13:37 AM11/2/09
to cytoscap...@googlegroups.com
I am getting the same errors.
Seems like the entire Cytoscape wiki is currently down.
Maital
Seems like the entire Cytoscape wiki is currently down.
Maital
Fengbo Xie
Nov 9, 2009, 2:16:57 AM11/9/09
to cytoscape-discuss
Keiichiro :
The cytoscape wiki is server still down.
On Nov 2, 6:13 pm, Maital Ashkenazi <maita...@gmail.com> wrote:
> I am getting the same errors.
> Seems like the entire Cytoscape wiki is currently down.
>
> Maital
>
> On Mon, Nov 2, 2009 at 12:09 PM, Mindaugas Razbadauskas
> <minr...@gmail.com>wrote:
>
> >>http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse/Plugi...
The cytoscape wiki is server still down.
On Nov 2, 6:13 pm, Maital Ashkenazi <maita...@gmail.com> wrote:
> I am getting the same errors.
> Seems like the entire Cytoscape wiki is currently down.
>
> Maital
>
> On Mon, Nov 2, 2009 at 12:09 PM, Mindaugas Razbadauskas
>
>
>
> > Thank you for tutorials,
>
> > But for now this pages are not working :)
>
> > Internal Server Error The server encountered an internal error or
> > misconfiguration and was unable to complete your request.
>
> > Please contact the server administrator, or webmaster and inform them of
> > the time the error occurred, and anything you might have done that may have
> > caused the error.
>
> > More information about this error may be available in the server error log.
>
> > 2009/10/29 Keiichiro Ono <kei...@gmail.com>
>
> > Hi.
> >> The new version of Cytoscape IDE confirmed to work on Windows, but
> >> somehow I cannot see the package tree from Eclipse. Please UNCHECK
> >> "Group items by category" and select Cytoscape IDE only to install the
> >> new version.
>
> >> Kei
>
> >> 2009/10/27 Keiichiro Ono <kei...@gmail.com>:
> >> > So far it's only tested on Mac, but the new Developer's document for
> >> > Eclipse users has been updated:
>
> >> >http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse
>
> >>http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse/CoreD...
>
>
> > Thank you for tutorials,
>
> > But for now this pages are not working :)
>
> > Internal Server Error The server encountered an internal error or
> > misconfiguration and was unable to complete your request.
>
> > Please contact the server administrator, or webmaster and inform them of
> > the time the error occurred, and anything you might have done that may have
> > caused the error.
>
> > More information about this error may be available in the server error log.
>
> > 2009/10/29 Keiichiro Ono <kei...@gmail.com>
>
> > Hi.
> >> The new version of Cytoscape IDE confirmed to work on Windows, but
> >> somehow I cannot see the package tree from Eclipse. Please UNCHECK
> >> "Group items by category" and select Cytoscape IDE only to install the
> >> new version.
>
> >> Kei
>
> >> 2009/10/27 Keiichiro Ono <kei...@gmail.com>:
> >> > So far it's only tested on Mac, but the new Developer's document for
> >> > Eclipse users has been updated:
>
> >> >http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse
>
>
> >>http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse/Plugi...
>
> >> > If you have any questions, please let me know.
>
> >> > Kei
>
> >> > 2009/10/27 Keiichiro Ono <kei...@gmail.com>:
> >> >> Hi.
> >> >> I've tested on Mac and looks everything works fine. It looks like a
> >> >> Windows dependent problem. I'll try on a Windows machine and test it
> >> >> again.
>
> >> >> Sorry for the trouble.
>
> >> >> Kei
>
> >> >> 2009/10/27 Fengbo Xie <fengbo....@gmail.com>:
> >> > If you have any questions, please let me know.
>
> >> > Kei
>
> >> > 2009/10/27 Keiichiro Ono <kei...@gmail.com>:
> >> >> Hi.
> >> >> I've tested on Mac and looks everything works fine. It looks like a
> >> >> Windows dependent problem. I'll try on a Windows machine and test it
> >> >> again.
>
> >> >> Sorry for the trouble.
>
> >> >> Kei
>
>
> >> >>> Since I can't install cytoscape IDE with all dependencies
> >> >>> automatically, I installed them manually one by one.
> >> >>> But the subversion JavaHL I installed is 1.6.6, while the required one
> >> >>> is 1.6.5, so I got the following error:
>
> >> >>> Cannot complete the install because one or more required items could
> >> >>> not be found.
> >> >>> Software being installed: Cytoscape IDE for Eclipse 3.5 0.2.2
> >> >>> (org.cytoscape.ide.eclipse.feature.group 0.2.2)
> >> >>> Missing requirement for filter (&(osgi.os=win32)(osgi.arch=x86)):
> >> >>> Subversion JavaHL Native Library Adapter (Required) 1.6.5
> >> >>> (org.tigris.subversion.clientadapter.javahl.feature.feature.group
> >> >>> 1.6.5) requires 'org.tigris.subversion.clientadapter.javahl.win32
> >> >>> [1.6.5]' but it could not be found
> >> >>> Cannot satisfy dependency:
> >> >>> From: Cytoscape IDE for Eclipse 3.5 0.2.2
> >> >>> (org.cytoscape.ide.eclipse.feature.group 0.2.2)
> >> >>> To:
> >> >>> org.tigris.subversion.clientadapter.javahl.feature.feature.group
> >> >>> [1.6.5]
>
> >> >>> On Oct 6, 4:31 am, Keiichiro Ono <kei...@gmail.com> wrote:
> >> >>>> Hi everyone.
>
> >> >>>> CytoscapeIDEfor Eclipse Galileo (3.5) is available now:
>
> >> >>>>http://chianti.ucsd.edu/~kono/data/cyide/<http://chianti.ucsd.edu/%7Ekono/data/cyide/>
> >> >>> Since I can't install cytoscape IDE with all dependencies
> >> >>> automatically, I installed them manually one by one.
> >> >>> But the subversion JavaHL I installed is 1.6.6, while the required one
> >> >>> is 1.6.5, so I got the following error:
>
> >> >>> Cannot complete the install because one or more required items could
> >> >>> not be found.
> >> >>> Software being installed: Cytoscape IDE for Eclipse 3.5 0.2.2
> >> >>> (org.cytoscape.ide.eclipse.feature.group 0.2.2)
> >> >>> Missing requirement for filter (&(osgi.os=win32)(osgi.arch=x86)):
> >> >>> Subversion JavaHL Native Library Adapter (Required) 1.6.5
> >> >>> (org.tigris.subversion.clientadapter.javahl.feature.feature.group
> >> >>> 1.6.5) requires 'org.tigris.subversion.clientadapter.javahl.win32
> >> >>> [1.6.5]' but it could not be found
> >> >>> Cannot satisfy dependency:
> >> >>> From: Cytoscape IDE for Eclipse 3.5 0.2.2
> >> >>> (org.cytoscape.ide.eclipse.feature.group 0.2.2)
> >> >>> To:
> >> >>> org.tigris.subversion.clientadapter.javahl.feature.feature.group
> >> >>> [1.6.5]
>
> >> >>> On Oct 6, 4:31 am, Keiichiro Ono <kei...@gmail.com> wrote:
> >> >>>> Hi everyone.
>
> >> >>>> CytoscapeIDEfor Eclipse Galileo (3.5) is available now:
>
>
> >> >>>> This is a set of Eclipse plugins required forCytoscape3 development.
> >> >>>> From this version, you need Java 6.
>
> >> >>>> Updated document is available here:
>
> >>http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse/CoreD...
>
> >> >>>> Please let me know if you find any problems.
>
> >> >>>> Thanks.
> >> >>>> Kei
>
> >> >>>> --
> >> >>>> Keiichiro Ono k...@ucsd.edu
>
> >> >>>> CytoscapeCore Developer Team:http://www.cytoscape.org/
> >> >>>> UCSD School of Medicine Trey Ideker Lab:
> >>http://chianti.ucsd.edu/idekerlab/
>
> >> >> --
> >> >> Keiichiro Ono k...@ucsd.edu
> >> >>>> This is a set of Eclipse plugins required forCytoscape3 development.
> >> >>>> From this version, you need Java 6.
>
> >> >>>> Updated document is available here:
>
> >>http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse/CoreD...
>
> >> >>>> Please let me know if you find any problems.
>
> >> >>>> Thanks.
> >> >>>> Kei
>
> >> >>>> --
> >> >>>> Keiichiro Ono k...@ucsd.edu
>
> >> >>>> CytoscapeCore Developer Team:http://www.cytoscape.org/
> >> >>>> UCSD School of Medicine Trey Ideker Lab:
> >>http://chianti.ucsd.edu/idekerlab/
>
> >> >> --
>
> >> >> Cytoscape Core Developer Team:http://www.cytoscape.org/
> >> >> UCSD School of Medicine Trey Ideker Lab:
> >>http://chianti.ucsd.edu/idekerlab/
>
> >> > --
> >> > Keiichiro Ono k...@ucsd.edu
> >> >> Cytoscape Core Developer Team:http://www.cytoscape.org/
> >> >> UCSD School of Medicine Trey Ideker Lab:
> >>http://chianti.ucsd.edu/idekerlab/
>
> >> > --
>
> >> > Cytoscape Core Developer Team:http://www.cytoscape.org/
> >> > UCSD School of Medicine Trey Ideker Lab:
> >>http://chianti.ucsd.edu/idekerlab/
>
> >> --
> >> Keiichiro Ono k...@ucsd.edu
> >> > Cytoscape Core Developer Team:http://www.cytoscape.org/
> >> > UCSD School of Medicine Trey Ideker Lab:
> >>http://chianti.ucsd.edu/idekerlab/
>
> >> --
Keiichiro Ono
Nov 9, 2009, 5:55:09 PM11/9/09
to cytoscap...@googlegroups.com
Sorry, but we are still working on this problem and not sure when we
can fix the wiki.
I'll let you know when it's back.
Kei
2009/11/8 Fengbo Xie <fengb...@gmail.com>:
--
Keiichiro Ono ko...@ucsd.edu
can fix the wiki.
I'll let you know when it's back.
Kei
2009/11/8 Fengbo Xie <fengb...@gmail.com>:
Keiichiro Ono ko...@ucsd.edu
Reply all
Reply to author
Forward
0 new messages