CytosacpeRPC problem using - cytoscape-discuss

The old Google Groups will be going away soon, but your browser is incompatible with the new version.
Message from discussion CytosacpeRPC problem using
Received-SPF: pass (google.com: domain of janj...@gmail.com designates 209.85.214.180 as permitted sender) client-ip=209.85.214.180;
MIME-Version: 1.0
In-Reply-To: <CAKrvCPgS9_cZbzbg24VS5BSTYxH6uM_sLigQ4q-scy-jhSf...@mail.gmail.com>
References: <6746917.340.1331670507513.JavaMail.geo-discussion-forums@vbtg38>
	<CAKrvCPgS9_cZbzbg24VS5BSTYxH6uM_sLigQ4q-scy-jhSf...@mail.gmail.com>
Date: Mon, 26 Mar 2012 19:54:47 +0200
Message-ID: <CAKrvCPhAFbUVFmbJVfUg1ocUsxU5JxV3g=N+njWpDZD3pkT...@mail.gmail.com>
Subject: Re: [Cytoscape-discuss] CytosacpeRPC problem using
From: Jan Bot <janj...@gmail.com>
To: cytoscape-discuss@googlegroups.com
Content-Type: multipart/alternative; boundary=f46d04478911f1b34704bc2911ff

--f46d04478911f1b34704bc2911ff
Content-Type: text/plain; charset=ISO-8859-1

Hi Jamal,

I've just tested this using Python and then it seems to work. Have you
tried other cases?

Cheers,

Jan

On Thu, Mar 22, 2012 at 9:00 PM, Jan Bot <janj...@gmail.com> wrote:

> Hi Jamal,
>
> I need to look into this, I currently can't see what's going wrong.
>
> Cheers,
>
> Jan
>
>
> On Tue, Mar 13, 2012 at 9:28 PM, Jamal Theodore <jartheod...@gmail.com>wrote:
>
>> Hi All,
>>
>> Why am I getting an error trying to execute the following function in
>> Perl with CytoscapeRPC?
>>
>>     $done = $client->call(
>>             'Cytoscape.getNodesByStringAttr',
>>             $coder->string('node_type'),
>>             $coder->string('Proteome')
>>             );
>>
>> Error:
>>
>> Fault returned from XML RPC Server, fault code 0: Failed to invoke method
>> getNodesByStringAttr
>> in class tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: null
>>
>> I think it's the correct syntax because when I change the function name I
>> get a different error. Also other functions such as $client->call(
>> 'Cytoscape.setSelectedNodes',... work fine.  What else could be wrong?
>>
>> Thanks,
>> Jamal
>>
>> --
>> You received this message because you are subscribed to the Google Groups
>> "cytoscape-discuss" group.
>> To view this discussion on the web visit
>> https://groups.google.com/d/msg/cytoscape-discuss/-/2Ia5gdn6DRsJ.
>> To post to this group, send email to cytoscape-discuss@googlegroups.com.
>> To unsubscribe from this group, send email to
>> cytoscape-discuss+unsubscribe@googlegroups.com.
>> For more options, visit this group at
>> http://groups.google.com/group/cytoscape-discuss?hl=en.
>>
>
>

--f46d04478911f1b34704bc2911ff
Content-Type: text/html; charset=ISO-8859-1
Content-Transfer-Encoding: quoted-printable

Hi Jamal,<br><br>I&#39;ve just tested this using Python and then it seems t=
o work. Have you tried other cases?<br><br>Cheers,<br><br>Jan<br><br><div c=
lass=3D"gmail_quote">On Thu, Mar 22, 2012 at 9:00 PM, Jan Bot <span dir=3D"=
ltr">&lt;<a href=3D"mailto:janj...@gmail.com">janj...@gmail.com</a>&gt;</sp=
an> wrote:<br>
<blockquote class=3D"gmail_quote" style=3D"margin:0pt 0pt 0pt 0.8ex;border-=
left:1px solid rgb(204,204,204);padding-left:1ex">Hi Jamal,<br><br>I need t=
o look into this, I currently can&#39;t see what&#39;s going wrong. <br><br=
>
Cheers,<br><br>Jan<div class=3D"HOEnZb"><div class=3D"h5"><br><br><div clas=
s=3D"gmail_quote">On Tue, Mar 13, 2012 at 9:28 PM, Jamal Theodore <span dir=
=3D"ltr">&lt;<a href=3D"mailto:jartheod...@gmail.com" target=3D"_blank">jar=
theod...@gmail.com</a>&gt;</span> wrote:<br>

<blockquote class=3D"gmail_quote" style=3D"margin:0pt 0pt 0pt 0.8ex;border-=
left:1px solid rgb(204,204,204);padding-left:1ex">Hi All,<br><br>Why am I g=
etting an error trying to execute the following function in Perl with Cytos=
capeRPC?<br>
<br><span style=3D"font-family:courier new,monospace">=A0=A0=A0 $done =3D $=
client-&gt;call(</span><br style=3D"font-family:courier new,monospace">
<span style=3D"font-family:courier new,monospace">=A0=A0=A0 =A0=A0=A0 =A0=
=A0=A0 &#39;Cytoscape.getNodesByStringAttr&#39;,</span><br style=3D"font-fa=
mily:courier new,monospace"><span style=3D"font-family:courier new,monospac=
e">=A0=A0=A0 =A0=A0=A0 =A0=A0=A0 $coder-&gt;string(&#39;node_type&#39;),</s=
pan><br style=3D"font-family:courier new,monospace">

<span style=3D"font-family:courier new,monospace">=A0=A0=A0 =A0=A0=A0 =A0=
=A0=A0 $coder-&gt;string(&#39;Proteome&#39;)</span><br style=3D"font-family=
:courier new,monospace"><span style=3D"font-family:courier new,monospace">=
=A0=A0=A0 =A0=A0=A0 =A0=A0=A0 );</span><br>

<br>Error:<br><br><span style=3D"font-family:courier new,monospace">Fault r=
eturned from XML RPC Server, fault code 0: Failed to invoke method getNodes=
ByStringAttr</span><br style=3D"font-family:courier new,monospace"><span st=
yle=3D"font-family:courier new,monospace">in class tudelft.CytoscapeRPC.Cyt=
oscapeRPCCallHandler: null</span><br>

<br>I think it&#39;s the correct syntax because when I change the function =
name I get a different error. Also other functions such as<span style=3D"fo=
nt-family:courier new,monospace"> $client-&gt;call(</span> <span style=3D"f=
ont-family:courier new,monospace">&#39;Cytoscape.setSelectedNodes&#39;,</sp=
an>... work fine.=A0 What else could be wrong?<br>

<br>Thanks,<br>Jamal<span><font color=3D"#888888"><br>

<p></p>

-- <br>
You received this message because you are subscribed to the Google Groups &=
quot;cytoscape-discuss&quot; group.<br>
To view this discussion on the web visit <a href=3D"https://groups.google.c=
om/d/msg/cytoscape-discuss/-/2Ia5gdn6DRsJ" target=3D"_blank">https://groups=
.google.com/d/msg/cytoscape-discuss/-/2Ia5gdn6DRsJ</a>.<br>=20
To post to this group, send email to <a href=3D"mailto:cytoscape-discuss@go=
oglegroups.com" target=3D"_blank">cytoscape-discuss@googlegroups.com</a>.<b=
r>
To unsubscribe from this group, send email to <a href=3D"mailto:cytoscape-d=
iscuss%2Bunsubscribe@googlegroups.com" target=3D"_blank">cytoscape-discuss+=
unsubscribe@googlegroups.com</a>.<br>

For more options, visit this group at <a href=3D"http://groups.google.com/g=
roup/cytoscape-discuss?hl=3Den" target=3D"_blank">http://groups.google.com/=
group/cytoscape-discuss?hl=3Den</a>.<br>


</font></span></blockquote></div><br>
</div></div></blockquote></div><br>

--f46d04478911f1b34704bc2911ff--
Create a group - Google Groups - Google Home - Terms of Service - Privacy Policy
Account Options
