Export TexFlame graph in Cytoscape compatible XGMML format

[Ravi]

Dear Cytoscape group members,

We are pleased to offer TexFlame, a on-line service, free to
individuals, that renders a single PubMed abstract as a SBGN-like
graph. We also offer users to export TexFlame graphs in XGMML format
which can be viewed in Cytoscape.

Availability: http://www.texflame.com
TexFlame usage Help:http://www.texflame.com/Help.html
Cytoscape (XGMML file export) Help: http://www.texflame.com/CytoHelp.html
Legend: http://www.texflame.com/Legends.html

We welcome feedback (con...@texflame.com/ra...@texflame.com) from the
enlightened Cytoscape user community on the way we have conceptualized
our graphs and also on our product in general.

- Ravikumar

[Keiichiro Ono]

Hi.
This is interesting.
I've tried the drag & drop the URL of the XGMML, and looks it works
fine (see the attached pic.)

Thanks.
Kei

2009/10/31 Ravi <sreeb...@gmail.com>:

--
Keiichiro Ono ko...@ucsd.edu

Cytoscape Core Developer Team: http://www.cytoscape.org/
UCSD School of Medicine Trey Ideker Lab: http://chianti.ucsd.edu/idekerlab/

[Keiichiro Ono]

One quick comment.
By default, Cytoscape uses "node size" instead of "node width" and
"height," so the diagram looks better if you unlock it. You can do it
from the default view editor (check box on the bottom-left).

Kei

2009/11/3 Keiichiro Ono <kei...@gmail.com>:

[Ravi]

Thanks for pointing to unlock option for node "width" and "height" in
cytoscape. We have incorporated your comment in our Cytoscape Help
page (Section 3B).

Thanks.
Ravikumar

On Nov 4, 12:26 am, Keiichiro Ono <kei...@gmail.com> wrote:
> One quick comment.
> By default, Cytoscape uses "node size" instead of "node width" and
> "height," so the diagram looks better if you unlock it.  You can do it
> from the default view editor (check box on the bottom-left).
>
> Kei
>
> 2009/11/3 Keiichiro Ono <kei...@gmail.com>:
>
>
>
> > Hi.
> > This is interesting.
> > I've tried the drag & drop the URL of the XGMML, and looks it works
> > fine (see the attached pic.)
>
> > Thanks.
> > Kei
>

> > 2009/10/31 Ravi <sreebash...@gmail.com>:

>
> >> Dear Cytoscape group members,
>
> >>     We are pleased to offer TexFlame, a on-line service, free to
> >> individuals, that renders a single PubMed abstract as a SBGN-like
> >> graph.  We also offer users to export TexFlame graphs in XGMML format
> >> which can be viewed in Cytoscape.
>
> >> Availability:http://www.texflame.com
> >> TexFlame usage Help:http://www.texflame.com/Help.html
> >> Cytoscape (XGMML file export) Help:http://www.texflame.com/CytoHelp.html
> >> Legend:http://www.texflame.com/Legends.html
>

> >> We welcome feedback  (cont...@texflame.com/r...@texflame.com) from the

> >> enlightened Cytoscape user community on the way we have conceptualized
> >> our graphs and also on our product in general.
>
> >> - Ravikumar
>
> > --

> > Keiichiro Ono    k...@ucsd.edu

>
> > Cytoscape Core Developer Team:http://www.cytoscape.org/
> > UCSD School of Medicine Trey Ideker Lab:http://chianti.ucsd.edu/idekerlab/
>
> --

> Keiichiro Ono    k...@ucsd.edu

>
> Cytoscape Core Developer Team:http://www.cytoscape.org/
> UCSD School of Medicine Trey Ideker Lab:http://chianti.ucsd.edu/idekerlab/
>

>  TexFrame2.png
> 247KViewDownload