Running Active Module without Expression Data Matrix

[Monsanto]

Hi folks:
Does anyone know how to the Active Module analysis without
Expression data matrix? I have a network, and a preprocessed gene list
and their corresponding p-values from certain differential expression
analysis. I want to test the enriched modules in the network, but the
software current requires Expression data, which is not what I want.
Please help.

Thanks,

[Mike Smoot]

Hi, jActiveModules just requires an attribute of type Double where all of the values are between 0 and 1.  So, you should be able to load your p-value as a normal attribute and jActiveModules should see it and be able to run.  If that is not the case, then please send along the files that you're using so that we can evaluate.

thanks,
Mike

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____________________________________________________________
Michael Smoot, Ph.D.              
UCSD School of Medicine
tel: 858-822-4756