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[169.230.76.31]) by gmr-mx.google.com with ESMTPS id o10si1337122pax.0.2012.10.03.13.26.45 (version=TLSv1/SSLv3 cipher=OTHER); Wed, 03 Oct 2012 13:26:45 -0700 (PDT) Received-SPF: pass (google.com: domain of ap...@gladstone.ucsf.edu designates 169.230.76.31 as permitted sender) client-ip=169.230.76.31; Authentication-Results: gmr-mx.google.com; spf=pass (google.com: domain of ap...@gladstone.ucsf.edu designates 169.230.76.31 as permitted sender) smtp.mail=ap...@gladstone.ucsf.edu X-IronPort-AV: E=Sophos;i="4.80,529,1344236400"; d="scan'208,217";a="7580798" Received: from gladstone.ucsf.edu ([169.230.76.25]) by gmail2.ucsf.edu with ESMTP; 03 Oct 2012 13:26:44 -0700 Received: from [172.24.1.2] (account ap...@gladstone.ucsf.edu [172.24.1.2] verified) by gladstone.ucsf.edu (CommuniGate Pro SMTP 5.4.0) with ESMTPA id 576957440; Wed, 03 Oct 2012 13:26:23 -0700 User-Agent: Microsoft-MacOutlook/14.2.4.120824 Date: Wed, 03 Oct 2012 13:26:47 -0700 Subject: Re: [Cytoscape-discuss] academic IDEA 21 help From: Alexander Pico To: Cytoscape-Discuss CC: Hemal Message-ID: Thread-Topic: [Cytoscape-discuss] academic IDEA 21 help In-Reply-To: Mime-version: 1.0 Content-type: multipart/alternative; boundary="B_3432115609_5352162" > This message is in MIME format. Since your mail reader does not understand this format, some or all of this message may not be legible. --B_3432115609_5352162 Content-type: text/plain; charset="US-ASCII" Content-transfer-encoding: 7bit Hi Hemal, Outside of GSoC, during the rest of the year, we organize mentoring opportunities for Cytoscape through NRBN Academy. http://nrnb.org/academy When you get a chance, could you fill-out the form there with the same project interests you expressed below. Connecting with potential mentors through this mailing list is the right way to go; it just helps to track requests and pairings through the Academy system as well. Thanks! - Alex From: Hemal Reply-To: Cytoscape-Discuss Date: Wednesday, October 3, 2012 8:51 AM To: Cytoscape-Discuss Cc: Hemal Subject: Re: [Cytoscape-discuss] academic IDEA 21 help Hi Scooter, Thank you for your reply. I have worked on java for more than a year. I have developed j2ee based web applications (microfinance, social network), contributed to swing erp software. I have designed LSI based custom search engine in java. I have published and won third prize for technical paper on large graph sampling at national level, reason for my inclination towards this. Waiting for your reply/suggestions. Anyone else here who can throw some light on this. regards, Hemal. On Wednesday, October 3, 2012 6:00:15 PM UTC+5:30, Scooter Morris wrote: > Hi Hemal, > I'm currently away at a workshop, but I'll be back in the office > next week. I would be happy to give you some pointers to see if you > want to tackle this. You mention you've got a Computer Science > background, have you done a lot of Java development? > > -- scooter > > On 10/3/12 7:51 AM, Hemal wrote: >> > Hi, >> > >> > I am interested/working on academic IDEA 21, and I want you to please >> > elaborate the idea >> > my queries are: >> > >> > 1. how to integrate JChemPaint in ChemViz ? -as maven >> > dependency(remote repo). >> > 2. pointers to resources for performing substructures search in >> > cytoscape network (implementation specific like design plan, algorithm >> > to use). status of "GSoC 2012 - IDEA 33: Substructure search and small >> > molecule lookups within Cytoscape network" would be helpful >> > 3. I suppose for finding small molecules in PubChem we have to use web >> > services, still any further information would be helpful >> > >> > I need help/resources specific to this idea so that I can get a clear >> > understanding of the idea. cy3 is in beta state I suppose we are going >> > to implement this in cy3, do we need to consider backward >> > compatibility issue? What I have to keep in mind for this idea. >> > >> > I am having Computer science background with high school biology >> > knowledge. >> > >> > Thanking you for your help in advance. >> > >> > Hemal >> > -- >> > You received this message because you are subscribed to the Google >> > Groups "cytoscape-discuss" group. >> > To view this discussion on the web visit >> > https://groups.google.com/d/msg/cytoscape-discuss/-/wt7YpazKr_AJ. >> > To post to this group, send email to cytoscap...@googlegroups.com >> . >> > To unsubscribe from this group, send email to >> > cytoscape-disc...@googlegroups.com . >> > For more options, visit this group at >> > http://groups.google.com/group/cytoscape-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "cytoscape-discuss" group. To view this discussion on the web visit https://groups.google.com/d/msg/cytoscape-discuss/-/hFF1JThrE1AJ. To post to this group, send email to cytoscape-discuss@googlegroups.com. To unsubscribe from this group, send email to cytoscape-discuss+unsubscribe@googlegroups.com. For more options, visit this group at http://groups.google.com/group/cytoscape-discuss?hl=en. --B_3432115609_5352162 Content-type: text/html; charset="US-ASCII" Content-transfer-encoding: quoted-printable
Hi Hemal,

Outside of GSoC, during the rest of the year, we organize mentoring o= pportunities for Cytoscape through NRBN Academy. 

<= div>http://nrnb.org/academy
=
When you get a chance, could you fill-out the form there with= the same project interests you expressed below. Connecting with potential m= entors through this mailing list is the right way to go; it just helps to tr= ack requests and pairings through the Academy system as well.

=
Thanks!
 - Alex


From: Hemal <hemal.padh...@gmail.com>
Reply-To: Cytoscape-Discuss <cytoscape-discuss@googlegroups.com>
Date: Wednesday, October 3, 2012 8:51 AMTo: Cytoscape-Discuss <cytoscape-discuss@googlegroups.com= >
Cc: Hemal <hemal.padh...@gmail.com>
Subject: Re: [Cytoscape-discuss] academic IDEA 2= 1 help

Hi Scooter,

Thank you for your reply. = I have worked on java for more than a year. I have developed j2ee based web = applications (microfinance, social network), contributed to swing erp softwa= re. I have designed LSI based custom search engine in java. I have published= and won third prize for technical paper on large graph sampling at national= level, reason for my inclination towards this.
Waiting for your reply/su= ggestions.

Anyone else here who can throw some light on this.

= regards,
Hemal.

On Wednesday, October 3, 2012 6:00:15 PM UTC+5:30,= Scooter Morris wrote:
H= i Hemal,
     I'm currently away at a workshop, but I'll be back = in the office
next week.  I would be happy to give you some pointers to see if y= ou
want to tackle this.  You mention you've got a Computer Science
background, have you done a lot of Java development?

-- scooter

On 10/3/12 7:51 AM, Hemal wrote:
> Hi,
>
> I am interested/working on academic IDEA 21, and I want you to ple= ase
> elaborate the idea
> my queries are:
>
> 1. how to integrate JChemPaint in ChemViz ? -as maven
> dependency(remote repo).
> 2. pointers to resources for performing substructures search in
> cytoscape network (implementation specific like design plan, algor= ithm
> to use). status of "GSoC 2012 - IDEA 33: Substructure search and s= mall
> molecule lookups within Cytoscape network" would be helpful
> 3. I suppose for finding small molecules in PubChem we have to use= web
> services, still any further information would be helpful
>
> I need help/resources specific to this idea so that I can get a cl= ear
> understanding of the idea. cy3 is in beta state I suppose we are g= oing
> to implement this in cy3, do we need to consider backward
> compatibility issue? What I have to keep in mind for this idea.
>
> I am having Computer science background with high school biology
> knowledge.
>
> Thanking you for your help in advance.
>
> Hemal
> --
> You received this message because you are subscribed to the Google=
> Groups "cytoscape-discuss" group.
> To view this discussion on the web visit
> https://groups.google.com/d/msg/cytoscape-disc= uss/-/wt7YpazKr_AJ.
> To post to this group, send email to cytoscap...@googlegroups.= com.
> To unsubscribe from this group, send email to
> cytoscape-disc...@googlegroups.com.
> For more options, visit this group at
> http://groups.google.com/group/cytoscape-discuss?hl=3Den.

--
You received this message because you are subscribed to the Google Groups "= cytoscape-discuss" group.
To view this discussion on the web visit https://groups.google.com/d/msg/cyt= oscape-discuss/-/hFF1JThrE1AJ.
To post to this group, send email to cytoscape-discuss@googlegroups.com.
To unsubscribe from this group, send email to cytoscape-discuss+unsubscribe@googlegroup= s.com.
For more options, visit this group at http://groups.google.com/group/cytoscape-discuss= ?hl=3Den.
 --B_3432115609_5352162--