Using jActiveModules cytoscape plugin for proteomics data

[WoA]

Does anyone use the 'jActivemodules' cytoscape plugin for finding out
subgraphs in a protein-protein interaction network? In that case how
do you provide the 'p-value' for expression which is required as
input?

Are there some good alternative cytoscape plugins /stand alone
software available?

Thanks

[gregor...@googlemail.com]

Hi WoA,

you may also try the ExprEssence plugin for Cytoscape, available at
http://sourceforge.net/projects/expressence/
published at http://www.biomedcentral.com/1752-0509/4/164

ExprEssence can be used to identify protein interactions, whose
frequency increase or decrease from one to another experimental
condition. All you need to start is a protein interaction network and
proteome data sets for two conditions.

If any question arises, please feel free to contact me.

Best regards,

Gregor