ChemViz plugin help

[Hemal]

Sir,

I am unable to work with ChemViz 1.1 plugin. I am using cytoscape
2.8.1.It is giving following message "ChemViz v.1.1 is not verfied to
work in the current version (2.8.1) of Cytoscape.". No plugin update
available, any help!

Also want to know how to work with ChemViz in eclipse.

[Scooter Morris]

Hi Hamal,
You need to upgrade to Cytoscape 2.8.3, which is the latest
release. Then ChemViz should work for you.

-- scooter

[Hemal]

Dear Sir,

I upgraded cytoscape to 2.8.3, ChemViz is now working.
I am interested/working on academic IDEA 21, and I want you to please elaborate the idea
my queries are:

1. how to integrate JChemPaint in ChemViz ? -as maven dependency(remote repo).
2. pointers to resources for performing substructures search in cytoscape network (implementation specific like design plan, algorithm to use). status of "GSoC 2012 - IDEA 33: Substructure search and small molecule lookups within Cytoscape network" would be helpful
3. I suppose for finding small molecules in PubChem we have to use web services, still any further information would be helpful

I need help/resources specific to this idea. I already went through resources available on the web viz. http://www.rbvi.ucsf.edu/Outreach/Workshops/ISMBTutorial.pdf http://www.rbvi.ucsf.edu/cytoscape/chemViz http://pubchem.ncbi.nlm.nih.gov etc.

I am having Computer science background with high school biology knowledge.

Thanking you for your help in advance.

Hemal