Adding GO annotation in Cytoscape

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WoA

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Jul 8, 2011, 1:29:12 PM7/8/11
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I've some Mouse protein interaction data. The nodes are named by their
Uniprot ID and in the *.sif file the interactions appear like this:

uniprotkb:Q80Y17 - uniprotkb:Q9JK84
uniprotkb:Q80Y17 - uniprotkb:Q62074
uniprotkb:Q80Y17 - uniprotkb:Q9JK83

After loading the sif file in Cytoscape v2.8 I wish to add GO
annotation to the individual nodes. However all my attempts failed
when using the online gene association information.

Can anybody tell me what 'primary key'/'Key attribute for network
values' I've to consider.

I tried the yeast example and that runs fine.

Thanks

I followed these two instructions:

http://www.cytoscape.org/manual/Cytoscape2_6Manual.html#Import%20Ontology%20and%20Annotation

http://genmapp.org/GOLayout/GOLayout.html

Chao Zhang

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Jul 8, 2011, 10:03:03 PM7/8/11
to cytoscape-discuss
We are working on new version of GOLayout and it will be released soon
(by the end of this Aug.).

It will provide more stable functions, e.g. GO annotation, GO-driven
network partitioning.

regards,
-Chao
> http://www.cytoscape.org/manual/Cytoscape2_6Manual.html#Import%20Onto...
>
> http://genmapp.org/GOLayout/GOLayout.html
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