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Cytoscape IDE 0.2.2 for Eclipse 3.5 Galileo Released
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Keiichiro Ono  
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 More options Oct 5, 4:31 pm
From: Keiichiro Ono <kei...@gmail.com>
Date: Mon, 5 Oct 2009 13:31:53 -0700
Local: Mon, Oct 5 2009 4:31 pm
Subject: Cytoscape IDE 0.2.2 for Eclipse 3.5 Galileo Released
Hi everyone.

Cytoscape IDE for Eclipse Galileo (3.5) is available now:

http://chianti.ucsd.edu/~kono/data/cyide/

This is a set of Eclipse plugins required for Cytoscape 3 development.
 From this version, you need Java 6.

Updated document is available here:

http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse/CoreD...

Please let me know if you find any problems.

Thanks.
Kei

--
Keiichiro Ono    k...@ucsd.edu

Cytoscape Core Developer Team: http://www.cytoscape.org/
UCSD School of Medicine Trey Ideker Lab: http://chianti.ucsd.edu/idekerlab/


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MINDOG  
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 More options Oct 21, 5:08 am
From: MINDOG <minr...@gmail.com>
Date: Wed, 21 Oct 2009 02:08:56 -0700 (PDT)
Local: Wed, Oct 21 2009 5:08 am
Subject: Re: Cytoscape IDE 0.2.2 for Eclipse 3.5 Galileo Released
Hello,

Then i try to install this plugin i get error:

Here are the details:

Cannot complete the install because one or more required items could
not be found.
  Software being installed: Cytoscape IDE for Eclipse 3.5 0.2.2
(org.cytoscape.ide.eclipse.feature.group 0.2.2)
  Missing requirement: Maven POM Editor (Optional) 0.9.8.200905041414
(org.maven.ide.eclipse.editor.feature.feature.group
0.9.8.200905041414) requires 'org.eclipse.zest.core 0.0.0' but it
could not be found
  Cannot satisfy dependency:
    From: Cytoscape IDE for Eclipse 3.5 0.2.2
(org.cytoscape.ide.eclipse.feature.group 0.2.2)
    To: org.maven.ide.eclipse.editor.feature.feature.group
[0.9.8.200905041414]

I use: Windows XP

Any suggestions?

thanks.
Mindaugas


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Fengbo Xie  
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 More options Oct 27, 11:23 am
From: Fengbo Xie <fengbo....@gmail.com>
Date: Tue, 27 Oct 2009 08:23:39 -0700 (PDT)
Local: Tues, Oct 27 2009 11:23 am
Subject: Re: Cytoscape IDE 0.2.2 for Eclipse 3.5 Galileo Released
Since I can't install cytoscape IDE with all dependencies
automatically, I installed them manually one by one.
But the subversion JavaHL I installed is 1.6.6, while the required one
is 1.6.5, so I got the following error:

Cannot complete the install because one or more required items could
not be found.
  Software being installed: Cytoscape IDE for Eclipse 3.5 0.2.2
(org.cytoscape.ide.eclipse.feature.group 0.2.2)
  Missing requirement for filter (&(osgi.os=win32)(osgi.arch=x86)):
Subversion JavaHL Native Library Adapter (Required) 1.6.5
(org.tigris.subversion.clientadapter.javahl.feature.feature.group
1.6.5) requires 'org.tigris.subversion.clientadapter.javahl.win32
[1.6.5]' but it could not be found
  Cannot satisfy dependency:
    From: Cytoscape IDE for Eclipse 3.5 0.2.2
(org.cytoscape.ide.eclipse.feature.group 0.2.2)
    To:
org.tigris.subversion.clientadapter.javahl.feature.feature.group
[1.6.5]

On Oct 6, 4:31 am, Keiichiro Ono <kei...@gmail.com> wrote:


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Keiichiro Ono  
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 More options Oct 27, 5:54 pm
From: Keiichiro Ono <kei...@gmail.com>
Date: Tue, 27 Oct 2009 14:54:00 -0700
Subject: Re: [Cytoscape-discuss] Re: Cytoscape IDE 0.2.2 for Eclipse 3.5 Galileo Released
Hi.
I've tested on Mac and looks everything works fine.  It looks like a
Windows dependent problem.  I'll try on a Windows machine and test it
again.

Sorry for the trouble.

Kei

2009/10/27 Fengbo Xie <fengbo....@gmail.com>:

--
Keiichiro Ono    k...@ucsd.edu

Cytoscape Core Developer Team: http://www.cytoscape.org/
UCSD School of Medicine Trey Ideker Lab: http://chianti.ucsd.edu/idekerlab/


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Keiichiro Ono  
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 More options Oct 27, 8:03 pm
From: Keiichiro Ono <kei...@gmail.com>
Date: Tue, 27 Oct 2009 17:03:19 -0700
Local: Tues, Oct 27 2009 8:03 pm
Subject: Re: [Cytoscape-discuss] Re: Cytoscape IDE 0.2.2 for Eclipse 3.5 Galileo Released
So far it's only tested on Mac, but the new Developer's document for
Eclipse users has been updated:

http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse
http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse/CoreD...
http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0/Eclipse/Plugi...

If you have any questions, please let me know.

Kei

2009/10/27 Keiichiro Ono <kei...@gmail.com>:

--
Keiichiro Ono    k...@ucsd.edu

Cytoscape Core Developer Team: http://www.cytoscape.org/
UCSD School of Medicine Trey Ideker Lab: http://chianti.ucsd.edu/idekerlab/


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Keiichiro Ono  
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 More options Oct 29, 11:39 am
From: Keiichiro Ono <kei...@gmail.com>
Date: Thu, 29 Oct 2009 08:39:52 -0700
Local: Thurs, Oct 29 2009 11:39 am
Subject: Re: [Cytoscape-discuss] Re: Cytoscape IDE 0.2.2 for Eclipse 3.5 Galileo Released

Hi.
The new version of Cytoscape IDE confirmed to work on Windows, but
somehow I cannot see the package tree from Eclipse.  Please UNCHECK
"Group items by category" and select Cytoscape IDE only to install the
new version.

Kei

2009/10/27 Keiichiro Ono <kei...@gmail.com>:

--
Keiichiro Ono    k...@ucsd.edu

Cytoscape Core Developer Team: http://www.cytoscape.org/
UCSD School of Medicine Trey Ideker Lab: http://chianti.ucsd.edu/idekerlab/

  ide1.png
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Mindaugas Razbadauskas  
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 More options Nov 2, 5:09 am
From: Mindaugas Razbadauskas <minr...@gmail.com>
Date: Mon, 2 Nov 2009 12:09:40 +0200
Local: Mon, Nov 2 2009 5:09 am
Subject: Re: [Cytoscape-discuss] Re: Cytoscape IDE 0.2.2 for Eclipse 3.5 Galileo Released

Thank you for tutorials,

But for now this pages are not working :)

Internal Server ErrorThe server encountered an internal error or
misconfiguration and was unable to complete your request.

Please contact the server administrator, or webmaster and inform them of the
time the error occurred, and anything you might have done that may have
caused the error.

More information about this error may be available in the server error log.

2009/10/29 Keiichiro Ono <kei...@gmail.com>


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Maital Ashkenazi  
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 More options Nov 2, 5:13 am
From: Maital Ashkenazi <maita...@gmail.com>
Date: Mon, 2 Nov 2009 12:13:37 +0200
Local: Mon, Nov 2 2009 5:13 am
Subject: Re: [Cytoscape-discuss] Re: Cytoscape IDE 0.2.2 for Eclipse 3.5 Galileo Released

I am getting the same errors.
Seems like the entire Cytoscape wiki is currently down.

Maital

On Mon, Nov 2, 2009 at 12:09 PM, Mindaugas Razbadauskas
<minr...@gmail.com>wrote:


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Fengbo Xie  
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 More options Nov 9, 2:16 am
From: Fengbo Xie <fengbo....@gmail.com>
Date: Sun, 8 Nov 2009 23:16:57 -0800 (PST)
Local: Mon, Nov 9 2009 2:16 am
Subject: Re: Cytoscape IDE 0.2.2 for Eclipse 3.5 Galileo Released
Keiichiro :
 The cytoscape wiki is server still down.

On Nov 2, 6:13 pm, Maital Ashkenazi <maita...@gmail.com> wrote:


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Keiichiro Ono  
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 More options Nov 9, 5:55 pm
From: Keiichiro Ono <k...@ucsd.edu>
Date: Mon, 9 Nov 2009 14:55:09 -0800
Local: Mon, Nov 9 2009 5:55 pm
Subject: Re: [Cytoscape-discuss] Re: Cytoscape IDE 0.2.2 for Eclipse 3.5 Galileo Released
Sorry, but we are still working on this problem and not sure when we
can fix the wiki.
I'll let you know when it's back.

Kei

2009/11/8 Fengbo Xie <fengbo....@gmail.com>:

--
Keiichiro Ono    k...@ucsd.edu

Cytoscape Core Developer Team: http://www.cytoscape.org/
UCSD School of Medicine Trey Ideker Lab: http://chianti.ucsd.edu/idekerlab/


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