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Can't find CyGroup/CyGroupFactory classes in latest release
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Omar Wagih  
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 More options Aug 29 2012, 12:15 am
From: Omar Wagih <omarwa...@gmail.com>
Date: Tue, 28 Aug 2012 21:15:02 -0700 (PDT)
Local: Wed, Aug 29 2012 12:15 am
Subject: Can't find CyGroup/CyGroupFactory classes in latest release
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I am trying to collapse nodes programatically with CyGroup. However,
CyGroup does not seem to exist in the build I have: 3.0.0-beta3-SNAPSHOT

Any ideas? Were they removed?

The functionality seems to be available through the GUI interface

Thanks,
Omar


 
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Omar Wagih  
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 More options Aug 29 2012, 11:57 am
From: Omar Wagih <omarwa...@gmail.com>
Date: Wed, 29 Aug 2012 08:57:22 -0700 (PDT)
Local: Wed, Aug 29 2012 11:57 am
Subject: Re: Can't find CyGroup/CyGroupFactory classes in latest release
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Also, nested networks functionality does not seem to be in the CyNode class
anymore..


 
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Scooter Morris  
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 More options Aug 29 2012, 12:54 pm
From: Scooter Morris <scoo...@cgl.ucsf.edu>
Date: Wed, 29 Aug 2012 09:54:36 -0700
Local: Wed, Aug 29 2012 12:54 pm
Subject: Re: [Cytoscape-discuss] Can't find CyGroup/CyGroupFactory classes in latest release
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On 08/28/2012 09:15 PM, Omar Wagih wrote:
> I am trying to collapse nodes programatically with CyGroup. However,
> CyGroup does not seem to exist in the build I have: 3.0.0-beta3-SNAPSHOT

> Any ideas? Were they removed?

No idea.  They have certainly not been removed.  Can you do a "list |
grep group" in the karaf console and let me know what you see?

-- scooter


 
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Scooter Morris  
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 More options Aug 29 2012, 12:58 pm
From: Scooter Morris <scoo...@cgl.ucsf.edu>
Date: Wed, 29 Aug 2012 09:58:13 -0700
Local: Wed, Aug 29 2012 12:58 pm
Subject: Re: [Cytoscape-discuss] Re: Can't find CyGroup/CyGroupFactory classes in latest release
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On 08/29/2012 08:57 AM, Omar Wagih wrote:

> Also, nested networks functionality does not seem to be in the CyNode
> class anymore..

It is -- it's now called a "network pointer", so you can look for the
getNetworkPointer/setNetworkPointer methods...

-- scooter


 
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Tim Hull  
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 More options Aug 29 2012, 1:03 pm
From: Tim Hull <tmh...@eng.ucsd.edu>
Date: Wed, 29 Aug 2012 10:03:41 -0700
Local: Wed, Aug 29 2012 1:03 pm
Subject: Re: [Cytoscape-discuss] Re: Can't find CyGroup/CyGroupFactory classes in latest release
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That was actually a tad confusing to me when I first saw it - do you think
we could look into making it clearer in the documentation that this is what
the network pointer is for? I initially thought it was a pointer to the
network (presumably the CyRootNetwork) containing the node.

Tim

On Wed, Aug 29, 2012 at 9:58 AM, Scooter Morris <scoo...@cgl.ucsf.edu>wrote:


 
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Tim Hull  
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 More options Aug 29 2012, 1:00 pm
From: Tim Hull <tmh...@eng.ucsd.edu>
Date: Wed, 29 Aug 2012 10:00:58 -0700
Local: Wed, Aug 29 2012 1:00 pm
Subject: Re: [Cytoscape-discuss] Can't find CyGroup/CyGroupFactory classes in latest release
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Does your project depend on the group-api project in the pom.xml file? This
is needed if you want to do anything with groups...

Tim

On Wed, Aug 29, 2012 at 9:54 AM, Scooter Morris <scoo...@cgl.ucsf.edu>wrote:


 
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Scooter Morris  
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 More options Aug 29 2012, 1:45 pm
From: Scooter Morris <scoo...@cgl.ucsf.edu>
Date: Wed, 29 Aug 2012 10:45:02 -0700
Local: Wed, Aug 29 2012 1:45 pm
Subject: Re: [Cytoscape-discuss] Re: Can't find CyGroup/CyGroupFactory classes in latest release
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On 08/29/2012 10:03 AM, Tim Hull wrote:

> That was actually a tad confusing to me when I first saw it - do you
> think we could look into making it clearer in the documentation that
> this is what the network pointer is for? I initially thought it was a
> pointer to the network (presumably the CyRootNetwork) containing the node.

Well, it's used for multiple things -- nested networks as well as
groups, but yes, it should be made clearer in the documentation.

-- scooter


 
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Omar Wagih  
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 More options Aug 29 2012, 7:29 pm
From: Omar Wagih <omarwa...@gmail.com>
Date: Wed, 29 Aug 2012 16:29:29 -0700 (PDT)
Local: Wed, Aug 29 2012 7:29 pm
Subject: Re: [Cytoscape-discuss] Can't find CyGroup/CyGroupFactory classes in latest release
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Hi Scooter,

The grep results in:
[  91] [Active     ] [            ] [  110] Cytoscape Groups API
(group-api) (3.0.0.beta2)
[ 121] [Active     ] [            ] [  125] Cytoscape Groups Impl
(group-impl) (3.0.0.alpha9)
[ 136] [Active     ] [            ] [  160] Cytoscape Group Data Impl
(group-data-impl) (3.0.0.alpha9)
[ 137] [Active     ] [            ] [  160] Cytoscape Group View Impl
(group-view-impl) (3.0.0.alpha9)
[ 161] [Active     ] [            ] [  170] Cytoscape Group Session Restore
Shim Impl (group-session-restore-shim-impl) (3.0.0.alpha9)

When I started my plugin I checked out sample2 as a maven project using
from: http://chianti.ucsd.edu/svn/core3/samples/trunk/sample02
I am using the netbeans IDE

Omar


 
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Scooter Morris  
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 More options Aug 29 2012, 7:36 pm
From: Scooter Morris <scoo...@cgl.ucsf.edu>
Date: Wed, 29 Aug 2012 16:36:24 -0700
Local: Wed, Aug 29 2012 7:36 pm
Subject: Re: [Cytoscape-discuss] Can't find CyGroup/CyGroupFactory classes in latest release
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On 08/29/2012 04:29 PM, Omar Wagih wrote:

OK, so the bundles are definitely being loaded.   You mention that you
used sample02 -- did you modify the pom.xml to depend on group-api?  If
not, you'll need to add:

    <dependency>
       <groupId>org.cytoscape</groupId>
       <artifactId>group-api</artifactId>
       <version>${cytoscape.api.version}</version>
     </dependency>

and I would be willing to bet you'll need model to:

    <dependency>
       <groupId>org.cytoscape</groupId>
       <artifactId>model-api</artifactId>
       <version>${cytoscape.api.version}</version>
     </dependency>

Then, in your CyActivator, you'll need to get the CyGroupFactory service:

     CyGroupFactory cyGroupFactory = getService(bc, CyGroupFactory.class);

Then you can create and manage groups...

-- scooter


 
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doron maymon  
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 More options May 13, 9:33 am
From: doron maymon <doronryt5...@gmail.com>
Date: Mon, 13 May 2013 06:33:00 -0700 (PDT)
Subject: Re: Can't find CyGroup/CyGroupFactory classes in latest release
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חג שבועות שמח J

השתחררתי מהצבא לא מזמן, הגעתי למסקנה שהגיע הזמן לקנות רכב דו גלגלי. זה פשוט
הפתרון הכי משתלם מבלי לקרוע את עצמי בשתי עבודות.

התחלתי לברר על דגמים בחברות שונות, ואני עדיין די מתלבט. האם כדאי לי לקחת
דגם מהנה  ושימושי כמו* קטנוע 125*<http://www.yamaha-motor.co.il/?catid=%7BF9FA06B4-4EAC-4A01-B43E-BB444...>
 טי מקס, או שעדיף להתחיל ממשהו אפילו יותר קטן כמו מיו למשל.... איפה אפשר להשיג
T MAX  במחיר פיצוץ?

עוד לא הוצאתי רישיון, אני עדיין באמצע השיעורי נהיגה. אולי כדי לקחת אופניים
חשמליות וזהו?

תודה מראש וחג שמח!


 
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