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Agilent literature search plugin
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Maral  
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 More options May 3 2012, 8:08 am
From: Maral <zohreh.dorod...@gmail.com>
Date: Thu, 3 May 2012 05:08:14 -0700 (PDT)
Local: Thurs, May 3 2012 8:08 am
Subject: Agilent literature search plugin
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Hi, I am a bit new to Cytoscape. I was wondering if there is any way
to change the databases which are being searched during text mining
with Agilent literature search plugin. Thank you very much.
Maral

 
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Alexander Pico  
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 More options May 3 2012, 1:11 pm
From: Alexander Pico <ap...@gladstone.ucsf.edu>
Date: Thu, 03 May 2012 10:11:24 -0700
Local: Thurs, May 3 2012 1:11 pm
Subject: Re: [Cytoscape-discuss] Agilent literature search plugin
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Hi Maral,

Not that I know of. Here's their documentation:
http://www.agilent.com/labs/research/litsearch.html
And a tutorial:
http://opentutorials.cgl.ucsf.edu/index.php/Tutorial:Agilent_Literatu...
ch

 - Alex

On 5/3/12 5:08 AM, "Maral" <zohreh.dorod...@gmail.com> wrote:


 
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michael_cre...@non.agilent.com  
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 More options May 3 2012, 1:13 pm
From: <michael_cre...@non.agilent.com>
Date: Thu, 3 May 2012 11:13:40 -0600
Local: Thurs, May 3 2012 1:13 pm
Subject: RE: [Cytoscape-discuss] Agilent literature search plugin
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Alex is correct, besides the three search engines you can choose from, you can't add new search engines.


 
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Maral  
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 More options May 8 2012, 6:27 am
From: Maral <zohreh.dorod...@gmail.com>
Date: Tue, 8 May 2012 03:27:25 -0700 (PDT)
Local: Tues, May 8 2012 6:27 am
Subject: Re: Agilent literature search plugin
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Many thanks for your comments, but do you think if there is any way to
change the existing search engines (OMIM, PubMed and UPSTO) not adding
something extra for example through xml file?

On May 3, 6:13 pm, <michael_cre...@non.agilent.com> wrote:


 
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Alexander Pico  
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 More options May 8 2012, 12:24 pm
From: Alexander Pico <ap...@gladstone.ucsf.edu>
Date: Tue, 8 May 2012 09:24:05 -0700
Local: Tues, May 8 2012 12:24 pm
Subject: Re: [Cytoscape-discuss] Re: Agilent literature search plugin
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Change without adding. So, you want to remove one or more sources from the search? Or search just pubmed during search A, then just patents during search B?

 - Alex

On May 8, 2012, at 3:27 AM, Maral <zohreh.dorod...@gmail.com> wrote:


 
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michael_cre...@non.agilent.com  
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 More options May 8 2012, 1:03 pm
From: <michael_cre...@non.agilent.com>
Date: Tue, 8 May 2012 11:03:24 -0600
Local: Tues, May 8 2012 1:03 pm
Subject: RE: [Cytoscape-discuss] Re: Agilent literature search plugin
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The View->Engine Selections dialog should allow you to choose what engines to use during a search:

[cid:image001....@01CD2D01.CE4814A0]

  image001.png
19K Download

 
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Maral  
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 More options May 9 2012, 12:08 pm
From: Maral <zohreh.dorod...@gmail.com>
Date: Wed, 9 May 2012 09:08:13 -0700 (PDT)
Local: Wed, May 9 2012 12:08 pm
Subject: Re: Agilent literature search plugin
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Hi All and many thanks for your comments, Sorry but I do not need to
search among the default search engines(Pubmed, UPSTO and OMIM), I
need to define or import my own search engines instead of the default
search engines and then text mining on them. Any help will be very
appreciated.

Thanks
Maral

On May 8, 6:03 pm, <michael_cre...@non.agilent.com> wrote:


 
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Alexander Pico  
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 More options May 9 2012, 1:27 pm
From: Alexander Pico <ap...@gladstone.ucsf.edu>
Date: Wed, 9 May 2012 10:27:49 -0700
Local: Wed, May 9 2012 1:27 pm
Subject: Re: [Cytoscape-discuss] Re: Agilent literature search plugin
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>> besides the three search engines you can choose from, you can't add new search engines

 - Alex

On May 9, 2012, at 9:08 AM, Maral <zohreh.dorod...@gmail.com> wrote:


 
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