Opening Cytoscape code on Eclipse

[osmar]

I am trying to set cytoscape core on Eclipse to see some internal aspects of it. I am following this tutorial http://wiki.cytoscape.org/Outdated_Cytoscape_3.0/Eclipse/CoreDevelopment with no sucess. Someone could help me, please?

Thanks in advance,

Osmar

[Tim Hull]

What exactly are you having problems with? I build/develop Cytoscape 3 components in Eclipse, so it definitely is known to work.

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[Peng-Liang Wang]

The page you looked at is out-dated, as the page name say.

Here is some of my note, may be useful for you. If you just want to
look at the code, just set the repository URL:

http://chianti.ucsd.edu/http://chianti.ucsd.edu/svn/core3


Peng


===========================================================
Last updated: May 23/2011


How to install eclipse, maven?


download Eclipse

From http://www.eclipse.org/downloads/

Install svn plugin for Eclipse

start eclipse --> help--> software update --> find and install-->
search for new features to install --> next --> new remote site -->
subclipse:


Choose subclipse and install.
http://subclipse.tigris.org/update_1.6.x (May 2011)


change setting: windows --> preferences --> Team--> SVN --> select
svnKit(pure java) --> apply



Install maven plugin

Help->Install new software...
Add two new repositories

M2Eclipse
New URL http://m2eclipse.sonatype.org/sites/m2e (May, 2011)


m2eclipse Extras --
Location: http://m2eclipse.sonatype.org/sites/m2e-extras


Check "Maven Integration for Eclipse Extra", "Maven Integration for
Subclipse", "Maven OSGi Development"


Note: Extras is required, otherwise, we will not have option svn in
"SCM" when we check out maven project

Restart Eclipse, otherwise SCM plugin just installed may not function correctly.


Run Eclipse on JDK (required by M2Eclipse plugin)

Edit eclipse.ini on eclipse installation

Add two lines before "-vmargs"
-vm
C:/Program Files/Java/jdk1.6.0_21/bin

Checkout Cytoscape 3 project

Window --> Open perspective --> Other --> SVN Repository Exploring
Right click on SVN Repositories panel, enter URL:
svn+ssh://grenache.ucsd.edu/cellar/common/svn

For non-developer, use this URL:
http://chianti.ucsd.edu/http://chianti.ucsd.edu/svn

Explore respository, core3 is for Cytosape 3

On Fri, Jan 11, 2013 at 9:49 AM, osmar <osmarj...@gmail.com> wrote: