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Zahra Narimani  
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 More options Oct 17 2012, 6:24 am
From: Zahra Narimani <z.narim...@gmail.com>
Date: Wed, 17 Oct 2012 03:24:05 -0700 (PDT)
Local: Wed, Oct 17 2012 6:24 am
Subject: Large Networks
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Hi

I have a network of about 40000 nodes and 2,000,000 edges. Is there anyway
I could load it in cytoscape and work with plugins?
I don't need visualization...

Thanks in advance,
Zahra


 
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Alexander Pico  
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 More options Oct 18 2012, 1:22 pm
From: Alexander Pico <ap...@gladstone.ucsf.edu>
Date: Thu, 18 Oct 2012 10:22:04 -0700 (PDT)
Local: Thurs, Oct 18 2012 1:22 pm
Subject: Re: Large Networks
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Hi,

Performance scales with hardware, memory in particular. For a network of
that size, you can load it with 16GB and perform headless operations like
clustering. You might even get away with 8GB, but below that I think you'll
have trouble.

 - Alex


 
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