Cytoscape for modeling dynamics in gene expression networks

[Adam Kiezun]

Hi,
How to best use Cytoscape to model dynamics of time-course gene
expression? After I import gene expression table, how do I step
through the time course? Or perhaps I should have a clone of the
network for each time-point (seems suboptimal because the layout will
get out of synch).

./adam

[Jing Gao]

Hi,
I think you can try dynamicXpr plugin from Cytoscape plugins website
under Analysis category at http://chianti.ucsd.edu/cyto_web/plugins/index.php

Jing

[Scooter Morris]

Hi Adam,
I think you can also look at clusterMaker from our lab or VistaClara
from Agilent, both of which will do exactly what you want.

-- scooter