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Description:
A low-volume mailing list used to announce new developments in Cytoscape.
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urgent request for your support by Sept 18th
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(on behalf of Trey Ideker) Dear Cytoscape Users, In order to continue development and support of the Cytoscape application, we rely heavily on grant support from the NIH. We are right now in the process of preparing an application to add support to Cytoscape as part of an NCRR National Resource for Network... more »
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Release of CyThesaurus, a Cytoscape plugin for ID mapping
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Dear Everyone, I am exited to announce the release of a new Cytoscape plugin--CyThesaurus, from a project of Google Summer of Code 2009. CyThesaurus is a plugin for performing ID mapping/translation for Cytoscape networks. In this version, the plugin supports translating node attributes in networks from source ID types to the target ID... more »
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MetScape release 1.0
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The CCMB/NCIBI MetScape 1.0 was released on September 1 2009 to
Cytoscape!
MetScape 1.0 is verified to work in Cytoscape v2.6.x. Please visit
MetScape website for more information [link].
Version 1.0 has the following new features:
Allow Compound Name Search
-Besides KEGG IDs, users are allowed to enter compound names to... more »
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annoying features in Cytoscape
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Hi Everyone, The Cytoscape team is preparing to work on a bug-fix release for Cytoscape 2.6.x and we're particularly interested in quashing "annoying" bugs and features. Is there anything that is confusing or doesn't seem to make sense? Something that behaves much differently than you expect? Is there a... more »
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hiring a Cytoscape Programmer
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Hi Everyone, Just a quick announcement that we're looking to hire an experienced Java developer to work on Cytoscape here at UC San Diego. The job posting is here: [link] Contact me directly with any questions. thanks, Mike
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Cytoscape 2.6.3
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Hi Everyone, The Cytoscape team would like to announce the arrival of version 2.6.3 of Cytoscape. This release addresses bugs introduced because of Apple's recent security upgrade for OS X. Specifically, this release fixes the problems of: - Misshapen windows and panels within windows. - Disappearing menus.... more »
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Cytoscape Birds of a Feather (BoF) at ISMB/ECCB 2009
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Hi Everyone, We are organizing a Birds of a Feather (BoF) meeting during ISMB/ECCB 2009 conference. Users and plugin developers are invited to join core developers for Cytoscape discussion. We are particularly interested in getting feedback on users’ experiences, problems, and bugs that we can fix.... more »
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Google Summer of Code 2009
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We are looking for students to help build Cytoscape, GenMAPP and
WikiPathways through the Google Summer of Code 2009 program. If you
are a student and are interested in open source and biology, then you
should apply!
[link]
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MetScape released
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The CCMB/NCIBI MetScape was released on March 13 2009 to Cytoscape!
You can Download MetScape from Cytoscape plugins websit at
[link]. MetScape is
verified to work in Cytoscape v2.6, v2.6.1 and v2.6.2.
MetScape is a Cytoscape plugin which is used to visualize and analyze... more »
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Cytoscape release 2.6.2!
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Hi Everyone, The Cytoscape team is proud to announce the release of Cytoscape 2.6.2! This release consists of bug fixes and should be fully compatible with all 2.6.x plugins.. Some of issues that have been addressed with this release include: - Fixed the webstart on Mac OS X problem. - Fixed Linkout for Linux when no default browser is set.... more »
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