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Announcing Multilevel Layout and Biological Evaluation plugins
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Johannes Tuikkala  
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 More options May 4 2012, 9:42 am
From: Johannes Tuikkala <jot...@gmail.com>
Date: Fri, 4 May 2012 06:42:53 -0700 (PDT)
Local: Fri, May 4 2012 9:42 am
Subject: Announcing Multilevel Layout and Biological Evaluation plugins
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We are happy to announce the release of our Multilevel Layout and
Biological Evaluation plugins. The operation of these plugins in a
wide variety of both physical and genetic interaction networks is
described in the recent paper:
http://www.biodatamining.org/content/5/1/2/

Multilevel Layout method applies the conventional layout algorithms
within a multilevel optimization framework to better capture the
hierarchical modularity of many biological networks. The plug-in is
available from the Google code website:
http://code.google.com/p/multilevellayout/

Biological Evaluation framework tests the layout solutions from any
graph layout method using the GO semantic similarity, and it can be
used e.g. to optimize the layout for a given network type. The plug-
in is available from the Google code website:
http://code.google.com/p/externalvalidator/

We hope you will find these plugins useful!

Johannes Tuikkala


 
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