clusterMaker 1.9 has been released!

[Scooter Morris]

The RBVI is happy to announce the release of clusterMaker 1.9. This is
a significant
enhancement over clusterMaker 1.6 and includes new algorithms,
improvements to older
algorithms, new visualizations, and a full CyCommand interface so other
plugins can
take advantage of clusterMaker's visualizations and algorithms.

New algorithms:
AutoSOME - Contributed by Aaron Newman, UCSB
Affinity Propagation
Connected Components
Community Clustering (GLay) - Contributed by Gang Su, University of
Michigan
MCODE - Contributed by Gary Bader, University of Toronto
Spectral Clustering of Protein Sequences (SCPS)
Transitivity Clustering

Major changes
MCL has been parallelized
Added ability to create Nested Networks from an attribute
Added ability to create new networks from an attribute with the
option to restore inter-cluster edges
Added full CyCommands interface

Minor changes
Added "Link networks" command to link selection across networks
Several enhancements to HeatMaps, including improved PDF output
Added link to NodeCharts plugin (if installed) that provides
heatstrips on the nodes

Updated documentation at:
http://www.cgl.ucsf.edu/cytoscape/cluster/clusterMaker.html