All xcorr are zero

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Viktor Granholm

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Jan 10, 2012, 10:24:30 AM1/10/12
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Hi group,
I've started using crux 1.37 but ran into problems as all xcorrs in the sqt-files after my sequest-searches turn out to be zero. Here's an example:

S       1374    1374    3       0.0     server  1449.7317       0.00    0.00000000      3970
M       1       1       1449.7212       nan     0       79.219582       8       48      Q.AIDHAVQLSRDEP.S       U
L       fid|6014821|locus|ECBD_1912|

Apart from that, the search worked fine. I used the following parameters:

precursor-window=15
precursor-window-type=ppm
isotopic-mass=mono
fragment-mass=mono
mod=15.994915:M:4
enzyme=no-enzyme
num-decoys-per-target=0
mz-bin-width=0.36
mz-bin-offset=0.11

I saw this for a few different ms2-files, do you have an idea of why this happens? Tell me if you'd need more information.
Thank you,
Viktor
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