"segmentation fault (core dump)" when run the search-for-xlink
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Fengchao Yu
Jan 21, 2013, 1:22:08 AM1/21/13
to crux-...@googlegroups.com
When I run the 'search-for-xlink' of crux, it stopped with an error. Here is the log:
=======================================================================================================================
INFO: CPU: yfc-ubuntu
INFO: Mon Jan 21 13:29:23 HKT 2013
COMMAND LINE: crux search-for-xlinks --parameter-file default.params /home/yfc-ubuntu/cl_data/206965min.ms2 /home/yfc-ubuntu/dbase/random50_plus_synth.fasta K:K 12
INFO: Beginning crux xlink-search
INFO: Loading Spectra
INFO: count 0 scan 4035 charge 2
INFO: count 100 scan 4085 charge 2
INFO: count 200 scan 4135 charge 2
INFO: count 300 scan 4185 charge 2
INFO: count 400 scan 4235 charge 2
INFO: count 500 scan 4285 charge 2
INFO: count 600 scan 4335 charge 2
INFO: count 700 scan 4385 charge 2
INFO: count 800 scan 4435 charge 2
INFO: count 900 scan 4485 charge 2
INFO: CPU: yfc-ubuntu
INFO: Mon Jan 21 13:29:23 HKT 2013
COMMAND LINE: crux search-for-xlinks --parameter-file default.params /home/yfc-ubuntu/cl_data/206965min.ms2 /home/yfc-ubuntu/dbase/random50_plus_synth.fasta K:K 12
INFO: Beginning crux xlink-search
INFO: Loading Spectra
INFO: count 0 scan 4035 charge 2
INFO: count 100 scan 4085 charge 2
INFO: count 200 scan 4135 charge 2
INFO: count 300 scan 4185 charge 2
INFO: count 400 scan 4235 charge 2
INFO: count 500 scan 4285 charge 2
INFO: count 600 scan 4335 charge 2
INFO: count 700 scan 4385 charge 2
INFO: count 800 scan 4435 charge 2
INFO: count 900 scan 4485 charge 2
==========================================================================================================================
Is there anyone know how to fix it?
Thanks
Charles Grant
Jan 22, 2013, 4:43:03 PM1/22/13
to Fengchao Yu, crux-...@googlegroups.com
Hi Fengchao,
On Jan 20, 2013, at 10:22 PM, Fengchao Yu <fcy...@gmail.com> wrote:
> When I run the 'search-for-xlink' of crux, it stopped with an error. Here is the log:
>
Would it be possible to forward us copies of your MS2 file, the FASTA file, and your default.params files? This would enable us to troubleshoot the problem.
Thanks,
Charles
On Jan 20, 2013, at 10:22 PM, Fengchao Yu <fcy...@gmail.com> wrote:
> When I run the 'search-for-xlink' of crux, it stopped with an error. Here is the log:
>
Thanks,
Charles
Message has been deleted
Fengchao Yu
Jan 22, 2013, 8:13:48 PM1/22/13
to Charles Grant, crux-...@googlegroups.com
Hi Charles,
I uploaded these files to Google Drive:
Thanks,
Fengchao
Charles Grant
Jan 24, 2013, 2:37:09 PM1/24/13
to Fengchao Yu, crux-...@googlegroups.com
Thanks Fengchao,
On Jan 22, 2013, at 5:13 PM, Fengchao Yu <fcy...@gmail.com> wrote:
> I uploaded these files to Google Drive:
> Attachment.zip
I've retrieved those files. Sean is already working on troubleshooting this.
Charles
On Jan 22, 2013, at 5:13 PM, Fengchao Yu <fcy...@gmail.com> wrote:
> I uploaded these files to Google Drive:
I've retrieved those files. Sean is already working on troubleshooting this.
Charles
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