Computational Genomics 2011Spring

Hi, You can pick up your graded HW5 from Michelle's office. Best, Selen

Hi Aparna, If you have time, can you mail me my grade please? Best, -Murat Can On Apr 26, 2011, at 6:

The following message was posted on the projects page on the course website: SCS Computing Facilities

Quick correction: 1-binocdf(k,n,p) = binocdf(nk-1,n,1-p) On Fri, Apr 15, 2011 at 12:08 PM, Lu Xie

I think the most confusing instruction is: remember, we would like to cluster activated genes in a

I just tried the URL given in the problem set http://llama.mshri.on.ca/cgi/func/funcassociate But it

You can discretize them directly. -Selen On Sun, Apr 10, 2011 at 8:52 PM, Lu Xie <fir...@gmail.com

Hi all, As a response to Jose's question below, in problem 4, you are only required to report p

Hi Lu, On Sun, Apr 10, 2011 at 5:14 PM, Lu Xie <fir...@gmail.com> wrote: The last row, Pos, is

As long as you specify which one is which, you would be fine. This is a graduate class which means

In question Q4.e they ask us to calculate a way to score different subgraphs using a binomial

Hello, as there have been a couple of questions regarding question 2 in homework 5. I have compiled

We are fitting a set of points (n) with a few splines (k). The question does not ask about the

Not sure if Selen is on the list so CCing her. John On 4/9/2011 2:46 PM, Salim Akhter Chowdhury wrote

Just a reminder, my office hours are on Wed from noon - 1pm now. Thanks, Aparna On Mon, Mar 28, 2011

Sure. Selen, please note. Minli, please change the due date on the website to Thursday, 4/14. Ziv Bar

No, but you can email me about questions you would like to ask about and I can direct you personally.

Hi all, I hope this could help you if you don't know how to answer HW1 Q5c even after looking at

I forgot to bring mine... On Wed, Mar 23, 2011 at 12:06 PM, Will Foran <will....@gmail.com>

Hi Aparna, I dont have the book.Can you please send me the pages. Akanksha On Tue, March 22, 2011 6:

Hi All, sorry for the late update. I will have office hours from 11.30 - 12.30 today, instead of 11am

Hi, I will not be at my office today (Mon). sorry for the late notice. I will move it to Tuesday 4-5

Slides for midterm review, as well as last year's midterm are posted on the course website. Good

Please also review UPGMA, simple dN/dS test, and MEME basics.

Hi, its fine to use slightly larger segments as long as you specifically mention that you are doing

1.4 you need to determine the line segments. You should have a new segment for every set of invariant

Sorry, there were some typos in the last response. Please read this one: (after 4) Not necessarily at

Lu, If you don't like the assignment let the professors know. It was written a long time ago and

Your code has to run with on afs (let me know if you are not sure what this means) This means that

..it doesn't seem like the "normalized" column has sufficient information to recreate