Hi I have run into some problems with allocating numpy.memmaps exceeding and accumulated size of about 2 GB. I have found out that the real problem relates to numpy.memmap using mmap.mmap
I've written a small test program to illustrate it:
import itertools import mmap import os
files = [] mmaps = [] file_names= [] mmap_cap=0 bytes_per_mmap = 100 * 1024 ** 2 try: for i in itertools.count(1): file_name = "d:/%d.tst" % i file_names.append(file_name) f = open(file_name, "w+b") files.append(f) mm = mmap.mmap(f.fileno(), bytes_per_mmap) mmaps.append(mm) mmap_cap += bytes_per_mmap print "Created %d writeable mmaps containing %d MB" % (i, mmap_cap/(1024**2))
#Clean up finally: print "Removing mmaps..." for mm, f, file_name in zip(mmaps, files, file_names): mm.close() f.close() os.remove(file_name) print "Done..."
which creates this output
Created 1 writeable mmaps containing 100 MB Created 2 writeable mmaps containing 200 MB .... Created 17 writeable mmaps containing 1700 MB Created 18 writeable mmaps containing 1800 MB Removing mmaps... Done... Traceback (most recent call last): File "C:\svn-sandbox\research\scipy\scipy\src\com\terma\kha \mmaptest.py", line 16, in <module> mm = mmap.mmap(f.fileno(), bytes_per_mmap) WindowsError: [Error 8] Not enough storage is available to process this command
There is more than 25 GB of free space on drive d: at this stage.
Is it a bug or a "feature" of the 32 bit OS?
I am surprised about it as I have not found any notes about these kinds of limitations in the documentation.
I am in dire need of these large memmaps for my task, and it is not an option to change OS due to other constraints in the system.
> Hi I have run into some problems with allocating numpy.memmaps > exceeding and accumulated size of about 2 GB. I have found out that > the real problem relates to numpy.memmap using mmap.mmap
> I've written a small test program to illustrate it:
>>>>> Slaunger <Slaun...@gmail.com> (S) wrote: >S> OS: Win XP SP3, 32 bit >S> Python 2.5.4 >S> Hi I have run into some problems with allocating numpy.memmaps >S> exceeding and accumulated size of about 2 GB. I have found out that >S> the real problem relates to numpy.memmap using mmap.mmap
Slaunger wrote: > OS: Win XP SP3, 32 bit > Python 2.5.4
> Hi I have run into some problems with allocating numpy.memmaps > exceeding and accumulated size of about 2 GB. I have found out that > the real problem relates to numpy.memmap using mmap.mmap
> I've written a small test program to illustrate it:
> #Clean up > finally: > print "Removing mmaps..." > for mm, f, file_name in zip(mmaps, files, file_names): > mm.close() > f.close() > os.remove(file_name) > print "Done..."
> which creates this output
> Created 1 writeable mmaps containing 100 MB > Created 2 writeable mmaps containing 200 MB > .... > Created 17 writeable mmaps containing 1700 MB > Created 18 writeable mmaps containing 1800 MB > Removing mmaps... > Done... > Traceback (most recent call last): > File "C:\svn-sandbox\research\scipy\scipy\src\com\terma\kha > \mmaptest.py", line 16, in <module> > mm = mmap.mmap(f.fileno(), bytes_per_mmap) > WindowsError: [Error 8] Not enough storage is available to process > this command
> There is more than 25 GB of free space on drive d: at this stage.
> Is it a bug or a "feature" of the 32 bit OS?
> I am surprised about it as I have not found any notes about these > kinds of limitations in the documentation.
> I am in dire need of these large memmaps for my task, and it is not an > option to change OS due to other constraints in the system.
> Is there anything I can do about it?
> Best wishes, > Kim
It's not a question of how much disk space there is, but how much virtual space 32 bits can address. 2**32 is about 4 gig, and Windows XP reserves about half of that for system use. Presumably a 64 bit OS would have a much larger limit.
Years ago I worked on Sun Sparc system which had much more limited shared memory access, due to hardware limitations. So 2gig seems pretty good to me.
There is supposed to be a way to tell the Windows OS to only use 1 gb of virtual space, leaving 3gb for application use. But there are some limitations, and I don't recall what they are. I believe it has to be done globally (probably in Boot.ini), rather than per process. And some things didn't work in that configuration.
Kim Hansen wrote: > 2009/7/24 Dave Angel <da...@ieee.org>:
>> It's not a question of how much disk space there is, but how much virtual >> space 32 bits can address. 2**32 is about 4 gig, and Windows XP reserves >> about half of that for system use. Presumably a 64 bit OS would have a much >> larger limit.
>> Years ago I worked on Sun Sparc system which had much more limited shared >> memory access, due to hardware limitations. So 2gig seems pretty good to >> me.
>> There is supposed to be a way to tell the Windows OS to only use 1 gb of >> virtual space, leaving 3gb for application use. But there are some >> limitations, and I don't recall what they are. I believe it has to be done >> globally (probably in Boot.ini), rather than per process. And some things >> didn't work in that configuration.
>> DaveA
> Hi Dave,
> In the related post I did on the numpy discussions:
> another user was kind enough to run my test program on both 32 bit and > 64 bit machines. On the 64 bit machine, there was no such limit, very > much in line with what you wrote. Adding the /3GB option in boot.ini > did not increase the available memory as well. Apparently, Python > needs to have been compiled in a way, which makes it possible to take > advantage of that switch and that is either not the case or I did > something else wrong as well.
> I acknowledge the explanation concerning the address space available. > Being an ignorant of the inner details of the implementation of mmap, > it seems like somewhat an "implementation detail" to me that such an > address wall is hit. There may be some good arguments from a > programming point of view and it may be a relative high limit as > compared to other systems but it is certainly at the low side for my > application: I work with data files typically 200 GB in size > consisting of datapackets each having a fixed size frame and a > variable size payload. To handle these large files, I generate an > "index" file consisting of just the frames (which has all the metadata > I need for finding the payloads I am interested in) and "pointers" to > where in the large data file each payload begins. This index file can > be up to 1 GB in size and at times I need to have access to two of > those at the same time (and then i hit the address wall). I would > really really like to be able to access these index files in a > read-only manner as an array of records on a file for which I use > numpy.memmap (which wraps mmap.mmap) such that I can pick a single > element, extract, e.g., every thousand value of a specific field in > the record using the convenient indexing available in Python/numpy. > Now it seems like I have to resort to making my own encapsulation > layer, which seeks to the relevant place in the file, reads sections > as bytestrings into recarrays, etc. Well, I must just get on with > it...
> I think it would be worthwhile specifying this 32 bit OS limitation in > the documentation of mmap.mmap, as I doubt I am the only one being > surprised about this address space limitation.
> Cheers, > Kim
I agree that some description of system limitations should be included in a system-specific document. There probably is one, I haven't looked recently. But I don't think it belongs in mmap documentation.
Perhaps you still don't recognize what the limit is. 32 bits can only address 4 gigabytes of things as first-class addresses. So roughly the same limit that's on mmap is also on list, dict, bytearray, or anything else. If you had 20 lists taking 100 meg each, you would fill up memory. If you had 10 of them, you might have enough room for a 1gb mmap area. And your code takes up some of that space, as well as the Python interpreter, the standard library, and all the data structures that are normally ignored by the application developer.
BTW, there is one difference between mmap and most of the other allocations. Most data is allocated out of the swapfile, while mmap is allocated from the specified file (unless you use -1 for fileno). Consequently, if the swapfile is already clogged with all the other running applications, you can still take your 1.8gb or whatever of your virtual space, when much less than that might be available for other kinds of allocations.
Executables and dlls are also (mostly) mapped into memory just the same as mmap. So they tend not to take up much space from the swapfile. In fact, with planning, a DLL needn't take up any swapfile space (well, a few K is always needed, realistically).. But that's a linking issue for compiled languages.
> (forwarding this message, as the reply was off-list)
> Kim Hansen wrote: > > 2009/7/24 Dave Angel <da...@ieee.org>:
> >> It's not a question of how much disk space there is, but how much virtual > >> space 32 bits can address. 2**32 is about 4 gig, and Windows XP reserves > >> about half of that for system use. Presumably a 64 bit OS would have a much > >> larger limit.
> >> Years ago I worked on Sun Sparc system which had much more limited shared > >> memory access, due to hardware limitations. So 2gig seems pretty good to > >> me.
> >> There is supposed to be a way to tell the Windows OS to only use 1 gb of > >> virtual space, leaving 3gb for application use. But there are some > >> limitations, and I don't recall what they are. I believe it has to be done > >> globally (probably in Boot.ini), rather than per process. And some things > >> didn't work in that configuration.
> >> DaveA
> > Hi Dave,
> > In the related post I did on the numpy discussions:
> > another user was kind enough to run my test program on both 32 bit and > > 64 bit machines. On the 64 bit machine, there was no such limit, very > > much in line with what you wrote. Adding the /3GB option in boot.ini > > did not increase the available memory as well. Apparently, Python > > needs to have been compiled in a way, which makes it possible to take > > advantage of that switch and that is either not the case or I did > > something else wrong as well.
> > I acknowledge the explanation concerning the address space available. > > Being an ignorant of the inner details of the implementation of mmap, > > it seems like somewhat an "implementation detail" to me that such an > > address wall is hit. There may be some good arguments from a > > programming point of view and it may be a relative high limit as > > compared to other systems but it is certainly at the low side for my > > application: I work with data files typically 200 GB in size > > consisting of datapackets each having a fixed size frame and a > > variable size payload. To handle these large files, I generate an > > "index" file consisting of just the frames (which has all the metadata > > I need for finding the payloads I am interested in) and "pointers" to > > where in the large data file each payload begins. This index file can > > be up to 1 GB in size and at times I need to have access to two of > > those at the same time (and then i hit the address wall). I would > > really really like to be able to access these index files in a > > read-only manner as an array of records on a file for which I use > > numpy.memmap (which wraps mmap.mmap) such that I can pick a single > > element, extract, e.g., every thousand value of a specific field in > > the record using the convenient indexing available in Python/numpy. > > Now it seems like I have to resort to making my own encapsulation > > layer, which seeks to the relevant place in the file, reads sections > > as bytestrings into recarrays, etc. Well, I must just get on with > > it...
> > I think it would be worthwhile specifying this 32 bit OS limitation in > > the documentation of mmap.mmap, as I doubt I am the only one being > > surprised about this address space limitation.
> > Cheers, > > Kim
> I agree that some description of system limitations should be included > in a system-specific document. There probably is one, I haven't looked > recently. But I don't think it belongs in mmap documentation.
> Perhaps you still don't recognize what the limit is. 32 bits can only > address 4 gigabytes of things as first-class addresses. So roughly the > same limit that's on mmap is also on list, dict, bytearray, or anything > else. If you had 20 lists taking 100 meg each, you would fill up > memory. If you had 10 of them, you might have enough room for a 1gb > mmap area. And your code takes up some of that space, as well as the > Python interpreter, the standard library, and all the data structures > that are normally ignored by the application developer.
> BTW, there is one difference between mmap and most of the other > allocations. Most data is allocated out of the swapfile, while mmap is > allocated from the specified file (unless you use -1 for fileno). > Consequently, if the swapfile is already clogged with all the other > running applications, you can still take your 1.8gb or whatever of your > virtual space, when much less than that might be available for other > kinds of allocations.
> Executables and dlls are also (mostly) mapped into memory just the same > as mmap. So they tend not to take up much space from the swapfile. In > fact, with planning, a DLL needn't take up any swapfile space (well, a > few K is always needed, realistically).. But that's a linking issue for > compiled languages.
> DaveA- Skjul tekst i anførselstegn -
> - Vis tekst i anførselstegn -
I do understand the 2 GB address space limitation. However, I think I have found a solution to my original numpy.memmap problem (which spun off to this problem), and that is PyTables, where I can address 2^64 data on a 32 bit machine using hd5 files and thus circumventing the "implementation detail" of the intermedia 2^32 memory address problem in the numpy.memmap/mmap.mmap implementation.