Error unsupported_parameters, parse_parameters

[kavican]

Hi Martin,

I tried to run the files you sent me on my computer but I got errors below:

 Stack trace:

 at /Users/kemal/circos-0.62/bin/../lib/Circos/Error.pm line 332

Circos::Error::fatal_error('configuration', 'unsupported_parameter', 'cl', 'heatmap') called at /Users/kemal/circos-0.62/bin/../lib/Circos.pm line 3971

Circos::parse_parameters('HASH(0x7fd01ad948f0)', 'heatmap') called at /Users/kemal/circos-0.62/bin/../lib/Circos.pm line 4551

Circos::read_data_file('/Users/kemal/circos-0.62/v2/cE.cL.log2diff.txt', 'heatmap', 'HASH(0x7fd01f1f2c88)', 'HASH(0x7fd01e395110)') called at /Users/kemal/circos-0.62/bin/../lib/Circos.pm line 1377

Circos::run('Circos') called at /usr/local/bin/circos line 233

Kemal

[Martin Krzywinski]

This is a safety feature on older versions. The parameter

restrict_parameter_names = yes

is found in etc/housekeeping.conf and, when set, disallows the
definition of non-standard parameters. You can override this using the
"*" syntax, which redefines a parameter already defined in a block.

<<include etc/housekeeping.conf>>
restrict_parameter_names* = no

I see you're using v0.62. Update to the latest version, when you get a
chance, which has this parameter turned off.

Martin Krzywinski
science + art
http://mkweb.bcgsc.ca

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