Hi Jacob - maybe you fixed this by now - but here goes anyway...
Have you switched perspectives within Eclipse? - Which toolbar buttons and menu items are shown is associated with the Perspective - so check if CFEclispe is still the selected perspective (selected tab within group at right hand side of the top toolbar)
It is possible to control which buttons are shown within the current perspective by selecting Window > Customize Perspective, and selecting the Commands tab.
Each command group has Menubar and / or Toolbar items associated with it.
Toolbar commands can be enabled and disabled individually, or you can switch them on and off by command group.
HTH,
Dan.