[SyneRBI/SIRF-Exercises] Brainweb-single_slice_motion problems (#48)

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Kris Thielemans

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Jun 4, 2020, 5:53:36 AM6/4/20
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Images loaded look like this
image
Motion states and sinos look empty.

It uses resampler.process which in this case should be replaced by forward

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Kris Thielemans

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Jun 4, 2020, 5:58:49 AM6/4/20
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same for Brainweb notebook

Richard Brown

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Jun 4, 2020, 6:05:35 AM6/4/20
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@casperdcl is this related to casperdcl/brainweb#1?

Casper da Costa-Luis

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Jun 4, 2020, 6:10:10 AM6/4/20
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👀 looks like it; never been able to reproduce this - would be great if you can. Are you running this on windows?

Kris Thielemans

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Jun 4, 2020, 6:11:50 AM6/4/20
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This is on our new VM (ubuntu 18.04, but python 2).
https://zenodo.org/record/3874226#.XtgnuGhKh6o

Casper da Costa-Luis

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Jun 4, 2020, 6:24:53 AM6/4/20
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Ooh nice. Will try to reproduce... Which ova? 2.0, 2.1, or 2.2-rc.1?

Kris Thielemans

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Jun 4, 2020, 6:26:05 AM6/4/20
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2.2-rc.1. I'm not sure what happens with the previous ones (but should have been fine)

Richard Brown

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Jun 4, 2020, 6:41:22 AM6/4/20
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Blank with python2, normal with python3 if that helps narrow things down for you.

Casper da Costa-Luis

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Jun 4, 2020, 8:41:32 AM6/4/20
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fixed in brainweb>=1.5.1

Richard Brown

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Jun 4, 2020, 10:08:46 AM6/4/20
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Sure?

image

image

Richard Brown

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Jun 4, 2020, 10:11:01 AM6/4/20
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ah, it was reusing pre-downloaded data. deleted the working folder and it seems to be working.

Casper da Costa-Luis

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Jun 4, 2020, 10:25:34 AM6/4/20
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Closed #48.

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