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cBioPortal for Cancer Genomics Discussion Group

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Jason White, Gaofei Zhao3

Mar 10

Connection to public API yields limited study availability

Hi Gaofei, The links you provided seemed to help with the issue, I can now see 530 studies through

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Connection to public API yields limited study availability

Hi Gaofei, The links you provided seemed to help with the issue, I can now see 530 studies through

Mar 10

John Francis, de Bruijn, Ino5

Mar 10

Searching for a specific Mutation Type

Can anyone answer my question above regarding API? Thank you, John On Wednesday, March 4, 2026 at 2:

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Searching for a specific Mutation Type

Can anyone answer my question above regarding API? Thank you, John On Wednesday, March 4, 2026 at 2:

Mar 10

SKINNER, Hollie (KING'S COLLEGE HOSPITAL NHS FOUNDATION TRUST)

Mar 10

Transcript error for CIC

Morning cBioPortal team, I am writing to make you aware of a transcript discrepancy for CIC on the

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Transcript error for CIC

Morning cBioPortal team, I am writing to make you aware of a transcript discrepancy for CIC on the

Mar 10

Chen, Hui-Zi, Curation Team2

Mar 9

Question re: cell line data

Hi Huizi Chen, Thanks for reaching out. Because the DepMap portal is dynamic, we rely on the data

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Question re: cell line data

Hi Huizi Chen, Thanks for reaching out. Because the DepMap portal is dynamic, we rely on the data

Mar 9

Leila Kamkar, … Gaofei Zhao10

Mar 9

Study Import in cBioPortal with redis and keycloak

Hi Gaofei, Thank you for your help. It is working now. Best, Leila On Thursday, March 5, 2026 at 7:33

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Study Import in cBioPortal with redis and keycloak

Hi Gaofei, Thank you for your help. It is working now. Best, Leila On Thursday, March 5, 2026 at 7:33

Mar 9

Mar 9

What is the data source and calling procedure for copy number data in ccle_broad_2019?

I'm trying to understand the source and processing of the discrete copy number alteration data in

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What is the data source and calling procedure for copy number data in ccle_broad_2019?

I'm trying to understand the source and processing of the discrete copy number alteration data in

Mar 9

Pritam Kumar Ghosh, … 高橋美湖13

Mar 9

cBioPortal user reported error

https://www.cbioportal.org/results/oncoprint?cancer_study_list=acyc_fmi_2014%2Cacyc_jhu_2016%

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cBioPortal user reported error

https://www.cbioportal.org/results/oncoprint?cancer_study_list=acyc_fmi_2014%2Cacyc_jhu_2016%

Mar 9

Buzdugan, Bogdan

Mar 9

Request for Access to cBioPortal AI Chat Interface

Hello! I hope this message finds you well. My name is Bogdan, and I am a graduate research fellow at

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Request for Access to cBioPortal AI Chat Interface

Hello! I hope this message finds you well. My name is Bogdan, and I am a graduate research fellow at

Mar 9

Tim Somervaille, Gaofei Zhao3

Mar 5

TARGET_GDC AML dataset

Gaofei, Thank you so much for your response. Sorry, but my original message was perhaps confusing. I

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TARGET_GDC AML dataset

Gaofei, Thank you so much for your response. Sorry, but my original message was perhaps confusing. I

Mar 5

Mar 4

{"type":"ErrorBoundary","log":"NotFoundError: Failed to execute

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{"type":"ErrorBoundary","log":"NotFoundError: Failed to execute

Mar 4

Mar 4

Good morning! I have a couple of questions need your help. How to compare two virtual groups? I have

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Good morning! I have a couple of questions need your help. How to compare two virtual groups? I have

Mar 4

Alkaissi, Hussam (NIH/NIDDK) [E], … Anu Vijay14

Feb 27

TCGA-PCPG Cohort

The germline variant data has already been captured and added as a clinical attribute in the Summary

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TCGA-PCPG Cohort

The germline variant data has already been captured and added as a clinical attribute in the Summary

Feb 27

Enkemann, Steven, Gaofei Zhao2

Feb 26

Hi Steven, I tried querying the GENIE cohort (v19.0) for PTEN, and it looks correct on my end. Could

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Hi Steven, I tried querying the GENIE cohort (v19.0) for PTEN, and it looks correct on my end. Could

Feb 26

Miu ki Yip, Jessica Singh2

Feb 25

Studies Structural Variant Chart Title Wording

Hi Miu ki, The denominator shown in that chart is driven by the gene panel matrix file. If that file

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Studies Structural Variant Chart Title Wording

Hi Miu ki, The denominator shown in that chart is driven by the gene panel matrix file. If that file

Feb 25

elias, Tim Kuijpers3

Feb 25

Reference Genome

Dear Elias, For some reason your second question did not end up in the board (and only in my inbox).

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Reference Genome

Dear Elias, For some reason your second question did not end up in the board (and only in my inbox).

Feb 25

Heather Costello, Jessica Singh2

Feb 25

fields populated by source data vs populated by cbp efforts

Hi Heather, Thanks for reaching out. This is a great question, especially given that you are building

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fields populated by source data vs populated by cbp efforts

Hi Heather, Thanks for reaching out. This is a great question, especially given that you are building

Feb 25

Mihir Shah, Jessica Singh2

Feb 25

Access to the CBioPortal AI-powered chat

Hi Mihir, Thanks for your message, and it's great to hear you're using cBioPortal for your

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Access to the CBioPortal AI-powered chat

Hi Mihir, Thanks for your message, and it's great to hear you're using cBioPortal for your

Feb 25

Sushma Sushma, Jessica Singh2

Feb 25

Request for Approval / Acknowledgment for Academic Use of TCGA Database in Breast Cancer Genomic Research

Hi Dr. Sushma, Thank you for your detailed message and for outlining your study so clearly. No formal

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Request for Approval / Acknowledgment for Academic Use of TCGA Database in Breast Cancer Genomic Research

Hi Dr. Sushma, Thank you for your detailed message and for outlining your study so clearly. No formal

Feb 25

Prasanth Yenduri, Tim Kuijpers2

Feb 25

Incremental Load Support for CNA DISCRETE_LONG Datatype

Dear Prasanth, The CNA_DISCRETE_LONG datatype has been added and is available to the cbioportal-core

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Incremental Load Support for CNA DISCRETE_LONG Datatype

Dear Prasanth, The CNA_DISCRETE_LONG datatype has been added and is available to the cbioportal-core

Feb 25

Franz Ketzer, … Aaron L8

Feb 20

mRNA profile not available

Hi, Thank you, it seems to be working now! Appreciate your help. Best, Franz Von: Aaron L <lisman.

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mRNA profile not available

Hi, Thank you, it seems to be working now! Appreciate your help. Best, Franz Von: Aaron L <lisman.

Feb 20

Bozhi Liu, ole...@thehyve.nl3

Feb 20

Dear Bozhi, You can access the chat in https://chat.cbioportal.org. Best regards, Oleguer Plantalech

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Dear Bozhi, You can access the chat in https://chat.cbioportal.org. Best regards, Oleguer Plantalech

Feb 20

prasanth yenduri, Tali Mazor2

Feb 18

Regarding cbio chat interface

Hi, Thanks for reaching out and apologies for the delayed response. This work is in the prototype

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Regarding cbio chat interface

Hi, Thanks for reaching out and apologies for the delayed response. This work is in the prototype

Feb 18

Mohammed Barakat, Tali Mazor3

Feb 14

Creating co-Mutation Groups

Dear Dr. Mazor, Thank you so much for your help and for the specific guidance on using the '

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Creating co-Mutation Groups

Dear Dr. Mazor, Thank you so much for your help and for the specific guidance on using the '

Feb 14

ramakrishnan krishnan, Tali Mazor3

Feb 13

The website is back up. Thanks for your patience. On Thu, Feb 12, 2026 at 5:12 PM ramakrishnan

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The website is back up. Thanks for your patience. On Thu, Feb 12, 2026 at 5:12 PM ramakrishnan

Feb 13

Claudia Huettner, Aaron L2

Feb 11

repeated error message

Thanks Claudia. Looking. On Wed, Feb 11, 2026 at 1:42 PM Claudia Huettner <claudia.huettner@

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repeated error message

Thanks Claudia. Looking. On Wed, Feb 11, 2026 at 1:42 PM Claudia Huettner <claudia.huettner@

Feb 11

QUAN LI, JJ Gao2

Feb 11

Hi Quan, Thanks so much for reaching out! Apologies for the delayed response. This work is in the

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Hi Quan, Thanks so much for reaching out! Apologies for the delayed response. This work is in the

Feb 11

Rebecca Sansale, Gaofei Zhao3

Feb 11

Cannot Initialize CBP from Docker

Hi Gaofei-- I looked into my issue more and the SQL server actually initializes fine. This problem

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Cannot Initialize CBP from Docker

Hi Gaofei-- I looked into my issue more and the SQL server actually initializes fine. This problem

Feb 11

Marks, Chris D, JJ Gao2

Feb 11

Rate limiting on API

Thanks for reaching out to us. Sorry for the trouble. You might have caught us when the site was

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Rate limiting on API

Thanks for reaching out to us. Sorry for the trouble. You might have caught us when the site was

Feb 11

matteo....@gmail.com, … Aaron L14

Feb 11

Error 429 when using cBioPortal API

Hello, For now we have restored access for api users at the usual address www.cbioportal.org. We

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Error 429 when using cBioPortal API

Hello, For now we have restored access for api users at the usual address www.cbioportal.org. We

Feb 11

Yin, Yue He/Him (AHN), JJ Gao2

Feb 11

cBioPortal() doesn't Work because too many requests

Hi Yue He, Thanks for reaching out to us. Sorry for the trouble. You might have caught us when the

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cBioPortal() doesn't Work because too many requests

Hi Yue He, Thanks for reaching out to us. Sorry for the trouble. You might have caught us when the

Feb 11

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