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Welcome! this is the place for users to post questions, report bugs, and interact. To download the software, manual, tutorial, see here:
http://www.stat.wisc.edu/~ane/
bucky/
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Jim Cohen
9/26/23
Visualization Question
Hi all, I was wondering if others have been running into issues being able to appropriately load the
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Visualization Question
Hi all, I was wondering if others have been running into issues being able to appropriately load the
9/26/23
Inbar Maayan
,
Cécile Ané
2
3/27/23
Bucky for tree comparison from nuclear vs mito
Based on your description, it looks like you need a different analysis than BUCKy, indeed. On Sunday,
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Bucky for tree comparison from nuclear vs mito
Based on your description, it looks like you need a different analysis than BUCKy, indeed. On Sunday,
3/27/23
Tomas Fer
9/6/21
Compilation error with gcc 11
Dear authors of BUCKy, I have been using this software for some time under Debian (compiled with GCC
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Compilation error with gcc 11
Dear authors of BUCKy, I have been using this software for some time under Debian (compiled with GCC
9/6/21
Rachel Keuler
,
Cécile Ané
2
9/5/21
BUCKy version check failed, update to version >= 1.4.4.
I can't reproduce the error, so I'm not sure how to help directly. But I highly suggest that
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BUCKy version check failed, update to version >= 1.4.4.
I can't reproduce the error, so I'm not sure how to help directly. But I highly suggest that
9/5/21
daniel yao
8/9/21
Questions about estimation of the average standard deviation of split frequencies in MrBayes
Hi everyone, I'm sorry if I posted my questions in unsuitable place. Perhaps, I should ask this
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Questions about estimation of the average standard deviation of split frequencies in MrBayes
Hi everyone, I'm sorry if I posted my questions in unsuitable place. Perhaps, I should ask this
8/9/21
nilofar alaie
, …
Cécile Ané
5
3/2/21
'bucky.pl' in the TICR.
Thanks a lot for your answer. I still don't know, why I get the fewer 4-taxon sets than expected,
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'bucky.pl' in the TICR.
Thanks a lot for your answer. I still don't know, why I get the fewer 4-taxon sets than expected,
3/2/21
Noppol Kobmoo
, …
Cécile Ané
3
10/26/20
BUCKy and the delineating of a species.
just in case the question is technical (instead of fundamental/philosophical): I wonder if the cause
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BUCKy and the delineating of a species.
just in case the question is technical (instead of fundamental/philosophical): I wonder if the cause
10/26/20
Noppol Kobmoo
, …
Cécile Ané
4
10/24/20
The meaning of sample-wide CF.
You are right!
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The meaning of sample-wide CF.
You are right!
10/24/20
Noppol Kobmoo
, …
Cécile Ané
5
10/22/18
What is the standard running time for BUCKY ?
Thank you very much for your suggestion. I have removed the genes with less resolved tress and it has
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What is the standard running time for BUCKY ?
Thank you very much for your suggestion. I have removed the genes with less resolved tress and it has
10/22/18
Ayse Tenger-Trolander
,
Steve Hunter
2
10/7/18
Visualization problem
Hello Ayse. There is a feature in our server's software that causes it not to accept large files
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Visualization problem
Hello Ayse. There is a feature in our server's software that causes it not to accept large files
10/7/18
Patricia Rivera
,
Cécile Ané
2
9/21/18
Running Bucky parallelized scripts on a cluster (Troubles setting the number of 4-taxon sets)
Hi Patricia, It looks like the bucky.pl script found 102 taxa, not 104, based on the number of 4-
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Running Bucky parallelized scripts on a cluster (Troubles setting the number of 4-taxon sets)
Hi Patricia, It looks like the bucky.pl script found 102 taxa, not 104, based on the number of 4-
9/21/18
tasha
8/6/18
BUCKy on Windows 10 machine
Hello, has anyone gotten Bucky and mbsum to run on a Windows 10 machine? I am running into weird
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BUCKy on Windows 10 machine
Hello, has anyone gotten Bucky and mbsum to run on a Windows 10 machine? I am running into weird
8/6/18
tasha
,
Cécile Ané
3
4/4/18
installing on mac OSx 10.12.6
Thank you! I will try these things On Wed, Apr 4, 2018, 3:03 PM Cécile Ané <a...@stat.wisc.edu>
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installing on mac OSx 10.12.6
Thank you! I will try these things On Wed, Apr 4, 2018, 3:03 PM Cécile Ané <a...@stat.wisc.edu>
4/4/18
Tom Near
,
Bohao Fang
2
8/30/17
what(): vector::_M_fill_insert
Hi, Did you solve the 'std::length_error' issue? I'm facing the same problem. Thank you!
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what(): vector::_M_fill_insert
Hi, Did you solve the 'std::length_error' issue? I'm facing the same problem. Thank you!
8/30/17
Laura Kelly
2
5/9/17
Error "Argument list too long" with BUCKy 1.4.4
Hello again I think I have fixed my own problem - sorry, I probably should have thought about it for
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Error "Argument list too long" with BUCKy 1.4.4
Hello again I think I have fixed my own problem - sorry, I probably should have thought about it for
5/9/17
tkch...@email.uark.edu
9/8/16
BUCKy using OpenMPI
Hi all, I made a version of BUCKy which allows parallel execution using OpenMPI. You can find it here
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BUCKy using OpenMPI
Hi all, I made a version of BUCKy which allows parallel execution using OpenMPI. You can find it here
9/8/16
Susana Freitas
,
Cécile Ané
4
9/2/16
memory error message: std::bad_alloc (after the MCMC)
Just a small note, it should be --no-population-tree (with -no-population-tree won't work). I
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memory error message: std::bad_alloc (after the MCMC)
Just a small note, it should be --no-population-tree (with -no-population-tree won't work). I
9/2/16
Simon Uribe-Convers
, …
Cécile Ané
5
6/29/16
Concordance factor to create "super-genes"
Thank you for all the recommendations Cécile! I think I'll go with weighted statistical binning
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Concordance factor to create "super-genes"
Thank you for all the recommendations Cécile! I think I'll go with weighted statistical binning
6/29/16
Gareth Pearson
,
Cécile Ané
3
4/10/16
BuckyTools
Thanks Cécile, that's good to know! Best, Gareth Gareth Pearson (Research Associate) Centre of
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BuckyTools
Thanks Cécile, that's good to know! Best, Gareth Gareth Pearson (Research Associate) Centre of
4/10/16
Stu Willis
, …
Cymon Cox
5
3/21/16
polytomies
Thanks for the reply Cecile, much appreciated, Cymon On 21 March 2016 at 14:59, Cecile Ane <cecile
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polytomies
Thanks for the reply Cecile, much appreciated, Cymon On 21 March 2016 at 14:59, Cecile Ane <cecile
3/21/16
E Guevara
12/7/15
Reasonable way to estimate an appropriate alpha?
Dear BUCKy group, I am analyzing a number of datasets for which I have little prior knowledge about
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Reasonable way to estimate an appropriate alpha?
Dear BUCKy group, I am analyzing a number of datasets for which I have little prior knowledge about
12/7/15
yaf...@gmail.com
, …
Simon Uribe-Convers
9
11/12/15
concordance factor values & Hybridization
Hi Cécile, thanks for the clarification, I really liked the paper! Cheers, Simon On Thursday,
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concordance factor values & Hybridization
Hi Cécile, thanks for the clarification, I really liked the paper! Cheers, Simon On Thursday,
11/12/15
Katie Everson
,
Cécile Ané
2
10/3/15
Running BUCKy on partitions rather than genes?
Hi Katie, PartitionFinder will tell you which partitions should be analyzed with different
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Running BUCKy on partitions rather than genes?
Hi Katie, PartitionFinder will tell you which partitions should be analyzed with different
10/3/15
Genevieve
,
Cécile Ané
2
7/9/15
missing concordance values?
Hi Geneviève, Both the concordance tree and the population tree are unrooted trees, even if you
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missing concordance values?
Hi Geneviève, Both the concordance tree and the population tree are unrooted trees, even if you
7/9/15
Helene Chiapello
,
Cécile Ané
2
6/26/15
bucky memory
The 'bad_alloc' error is most likely from a lack of memory. It occurs before the MCMC starts,
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bucky memory
The 'bad_alloc' error is most likely from a lack of memory. It occurs before the MCMC starts,
6/26/15
Cécile Ané
6/22/15
version1.4.4
A new version of BUCKy was just released, v1.4.4, available here: www.stat.wisc.edu/~ane/bucky It
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version1.4.4
A new version of BUCKy was just released, v1.4.4, available here: www.stat.wisc.edu/~ane/bucky It
6/22/15
Genevieve
, …
Weisrock, David
6
5/8/15
polymorphisms
Thanks for the clarification on MrBayes Bret. I seem to remember that earlier versions didn't use
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polymorphisms
Thanks for the clarification on MrBayes Bret. I seem to remember that earlier versions didn't use
5/8/15
Michael Amor
4/30/15
Version 1.4.3
Hi Bret, I am wonding if BUCKy 1.4.3 included the update that assigns probabilities to all trees that
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Version 1.4.3
Hi Bret, I am wonding if BUCKy 1.4.3 included the update that assigns probabilities to all trees that
4/30/15
Genevieve
4/24/15
restarting an analysis
Hi, I'm running a very large BUCKy analysis, and my max time runs out on the cluster before it
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restarting an analysis
Hi, I'm running a very large BUCKy analysis, and my max time runs out on the cluster before it
4/24/15
Genevieve
,
Cécile Ané
2
4/9/15
std::bad_alloc
To reduce memory requirement, you could reduce your taxon set, or else reduce your gene set and keep
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std::bad_alloc
To reduce memory requirement, you could reduce your taxon set, or else reduce your gene set and keep
4/9/15