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database with Ensembl transcript identifiers
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Martina Kutmon  
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 More options May 8 2012, 2:24 pm
From: Martina Kutmon <mkut...@gmail.com>
Date: Tue, 8 May 2012 20:24:38 +0200
Local: Tues, May 8 2012 2:24 pm
Subject: database with Ensembl transcript identifiers
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The normal gene databases just contain the Ensembl gene identifiers, but
not the transcripts, right?
Is there already a database available that also has the transcripts?

Best,
Martina

*-----------------------------------------------
Martina Kutmon*
*PhD researcher*
*Department of Bioinformatics*
*Maastricht University, NL
email: mkut...@gmail.com
skype: mkutmon*


 
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Alexander Pico  
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 More options May 8 2012, 6:12 pm
From: Alexander Pico <ap...@gladstone.ucsf.edu>
Date: Tue, 08 May 2012 15:12:18 -0700
Local: Tues, May 8 2012 6:12 pm
Subject: Re: [bridgedb] database with Ensembl transcript identifiers
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No. We tried adding transcripts and exons as one point and the dbs exploded
in size, making them unmanageable for use in WikiPathways.  I could produce
separate versions with transcripts for projects/usage outside of WP. Iąd
like to do this for just 1 or 2 species based on need. Or, the transcript to
gene mappings could always be added as a separate table with transitivity
through BridgeDb.

 - Alex

On 5/8/12 11:24 AM, "Martina Kutmon" <mkut...@gmail.com> wrote:


 
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