> Available at
http://sw.neurocommons.org:8894/sparql > I'll install it the neurocommons once we've caught any further
> errors. This is the basic info, for reference.
> Couple of queries to get you going:
> Default-graph: http://purl.org/commons/record/reactome/ (should
> have named it better)
> prefix re: <http://purl.org/commons/ontology/reactome/>
> prefix rei: <http://purl.org/commons/record/reactome/>
> prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
> prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
> SELECT distinct ?class WHERE {?s rdf:type ?class}
> SELECT distinct ?item WHERE {?item rdf:type re:DataModel}
> SELECT distinct ?label WHERE {?item rdf:type re:RegulationType. ?
> item rdfs:label ?label}
> SELECT distinct ?p WHERE {?s ?p ?o}
> SELECT ?ontology WHERE {?s re:ontology ?ontology} # unicode
> encoded version of the ontology as rendered in GKB
> Loading it in to virtuoso:
> DB.DBA.TTLP_MT(file_to_string_output('/work/reactome/
> reactome.nt'),'http://purl.org/commons/record/reactome/' ,'http://
> purl.org/commons/record/reactome/',0);
> Creating the rdf using d2rq:
> sudo ./dump-rdf -f N-TRIPLE -o reactome.nt -m file:///work/
> reactome/d2r-server-0.4/reactomemapping.n3 -b http://purl.org/
> commons/record/reactome/
> (note the N3 output, while prettier, exercises a bug in d2rq)
> Attached: reactomemapping.pl (scripts a rewrite of the default d2rq
> mapping)
> reactomemapping.n3(the output of the script, used as input to d2rq)
> <reactomemapping.pl>
> <reactomemapping.n3>
