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Blinov,Michael
Jan 8
Computational Cell Biology Workshop ONLINE
The 25th Annual Workshop on Computational Cell Biology will take place February 26-28, 2024 at the
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Computational Cell Biology Workshop ONLINE
The 25th Annual Workshop on Computational Cell Biology will take place February 26-28, 2024 at the
Jan 8
Blinov,Michael
9/12/23
COMBINE 2023 update
Hello, fellow SBMLers, SBGNers, BioPAXers, BNGLers, and other modelers and developers, COMBINE in
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COMBINE 2023 update
Hello, fellow SBMLers, SBGNers, BioPAXers, BNGLers, and other modelers and developers, COMBINE in
9/12/23
Blinov,Michael
8/29/23
COMBINE/ICSB tutorials and workshops, COMBINE financial aid
Dear colleagues, Time is running out for tutorials/workshop proposals and financial aid applications!
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COMBINE/ICSB tutorials and workshops, COMBINE financial aid
Dear colleagues, Time is running out for tutorials/workshop proposals and financial aid applications!
8/29/23
Blinov,Michael
8/14/23
COMBINE workshop October 5-8th, 2023
Dear Computational Biologists, The "Computational Modeling in Biology" Network (COMBINE,
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COMBINE workshop October 5-8th, 2023
Dear Computational Biologists, The "Computational Modeling in Biology" Network (COMBINE,
8/14/23
rod...@gmail.com
8/7/23
BioPAX Paxtools and Validator update
PaxTools v5.2.1, v5.3.0 and Validator v5.1.0 Released to Maven Central repository see https://biopax.
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BioPAX Paxtools and Validator update
PaxTools v5.2.1, v5.3.0 and Validator v5.1.0 Released to Maven Central repository see https://biopax.
8/7/23
Kozo Nishida
, …
Augustin Luna
5
7/5/23
Software recommended for creating BioPAX from scratch
Yes, if you're a Python user, the pybiopax would be good to try as suggested by Quirin. Augustin
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Software recommended for creating BioPAX from scratch
Yes, if you're a Python user, the pybiopax would be good to try as suggested by Quirin. Augustin
7/5/23
Quirin Manz
5/11/23
Using BioPAX as a standard for disease modules
Dear BioPAX community, Does anyone have experience using BioPAX as a data standard for exchanging
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Using BioPAX as a standard for disease modules
Dear BioPAX community, Does anyone have experience using BioPAX as a data standard for exchanging
5/11/23
Amir Jadidinejad
3/13/23
sample sparql queries
Hi, Is there any example to better understand the potential of biopax data model? I'm interested
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sample sparql queries
Hi, Is there any example to better understand the potential of biopax data model? I'm interested
3/13/23
Kozo Nishida
9/2/22
How to extract only Xrefs from BioPAX
Hi BioPAX discussion group, I would like to extract only [the all] Xrefs from the BioPAX[s] in EcoCyc
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How to extract only Xrefs from BioPAX
Hi BioPAX discussion group, I would like to extract only [the all] Xrefs from the BioPAX[s] in EcoCyc
9/2/22
Dana Rubin
, …
Gary Bader
3
5/10/21
BioPAX versus OBO
Hi Dana - great question. What are you trying to accomplish with your use of ontologies? BioPAX was
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BioPAX versus OBO
Hi Dana - great question. What are you trying to accomplish with your use of ontologies? BioPAX was
5/10/21
Marco Antoniotti
2/24/21
Workshop and School on Cancer Development and Complexity 2021, May 24-28, 2021
Apologies for multiple postings... Call for Participation Lake Como Workshop and School on Cancer
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Workshop and School on Cancer Development and Complexity 2021, May 24-28, 2021
Apologies for multiple postings... Call for Participation Lake Como Workshop and School on Cancer
2/24/21
Gary Bader
,
Golebiewski, Martin
2
7/21/20
Fwd: COMBINE 2020 virtual meeting: October 5th-9th 2020 - Save the date
Dear BioPAX community, The "Computational Modeling in Biology" Network (COMBINE) is an
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Fwd: COMBINE 2020 virtual meeting: October 5th-9th 2020 - Save the date
Dear BioPAX community, The "Computational Modeling in Biology" Network (COMBINE) is an
7/21/20
Blinov,Michael
2/24/20
ICSB-2020 Call for Workshop & Tutorial Proposals
Call for Workshop & Tutorial Proposals Proposal deadline: March 15. The International Conference
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ICSB-2020 Call for Workshop & Tutorial Proposals
Call for Workshop & Tutorial Proposals Proposal deadline: March 15. The International Conference
2/24/20
Blinov,Michael
1/7/20
Support for student travel to HARMONY 2020 meeting is available
Dear colleagues, We're happy to announce that funds from the NSF are available to support US-
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Support for student travel to HARMONY 2020 meeting is available
Dear colleagues, We're happy to announce that funds from the NSF are available to support US-
1/7/20
Blinov,Michael
12/20/19
Improved annotations at VCell and much more
Dear BioPAX Community, We are excited to report that a major new release of VCell will be
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Improved annotations at VCell and much more
Dear BioPAX Community, We are excited to report that a major new release of VCell will be
12/20/19
Adrien Rougny
11/28/19
survey on SBGN
Dear All, We have prepared a general survey on SBGN. We would be pleased if you could take a few
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survey on SBGN
Dear All, We have prepared a general survey on SBGN. We would be pleased if you could take a few
11/28/19
Luis Cristóbal Monraz Gómez
,
Igo R
3
11/15/19
Issues using the BioPAX validator
Regarding "Afterwards, I tried to use the version in java but I could not run it successfully,
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Issues using the BioPAX validator
Regarding "Afterwards, I tried to use the version in java but I could not run it successfully,
11/15/19
Jeffrey Wong
11/5/19
Pathway Commons version 12 is now online
Version 12 of Pathway Commons is now online! Pathway Commons collects and integrates pathway and
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Pathway Commons version 12 is now online
Version 12 of Pathway Commons is now online! Pathway Commons collects and integrates pathway and
11/5/19
Golebiewski, Martin
6/21/19
COMBINE 2019, 15 - 19 July 2019, Heidelberg (Germany) - ULTIMATE CHANCE TO REGISTER BY JUNE 25th!!
Dear all, The deadline for registration for COMBINE 2019 has passed since one week now. Thank you
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COMBINE 2019, 15 - 19 July 2019, Heidelberg (Germany) - ULTIMATE CHANCE TO REGISTER BY JUNE 25th!!
Dear all, The deadline for registration for COMBINE 2019 has passed since one week now. Thank you
6/21/19
Golebiewski, Martin
6/14/19
COMBINE 2019, 15 - 19 July 2019, Heidelberg (Germany) - LAST CHANCE TO REGISTER BY TOMORROW!!
Dear colleagues, Tomorrow is the registration deadline for our EU-STANDS4PM workshop in Heidelberg on
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COMBINE 2019, 15 - 19 July 2019, Heidelberg (Germany) - LAST CHANCE TO REGISTER BY TOMORROW!!
Dear colleagues, Tomorrow is the registration deadline for our EU-STANDS4PM workshop in Heidelberg on
6/14/19
Golebiewski, Martin
6/3/19
Re: COMBINE 2019: 10th Computational Modeling in Biology Network Forum, 15 - 19 July 2019, Heidelberg (Germany)
Dear colleagues, The abstract deadline for COMBINE 2019 (10th Computational Modeling in Biology
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Re: COMBINE 2019: 10th Computational Modeling in Biology Network Forum, 15 - 19 July 2019, Heidelberg (Germany)
Dear colleagues, The abstract deadline for COMBINE 2019 (10th Computational Modeling in Biology
6/3/19
Golebiewski, Martin
5/21/19
COMBINE 2019, 15 - 19 July 2019, Heidelberg (Germany) - ONLY 10 DAYS TO GO FOR THE ABSTRACT SUBMISSION DEADLINE
Dear colleagues, (apologies for possible multiple postings) We invite you to attend COMBINE 2019, the
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COMBINE 2019, 15 - 19 July 2019, Heidelberg (Germany) - ONLY 10 DAYS TO GO FOR THE ABSTRACT SUBMISSION DEADLINE
Dear colleagues, (apologies for possible multiple postings) We invite you to attend COMBINE 2019, the
5/21/19
Blinov,Michael
5/12/19
Support for student travel to COMBINE 2019 meeting is available
Dear colleagues, We're happy to announce that funds from the NSF are available to support US-
unread,
Support for student travel to COMBINE 2019 meeting is available
Dear colleagues, We're happy to announce that funds from the NSF are available to support US-
5/12/19
Golebiewski, Martin
5/7/19
COMBINE 2019: 10th Computational Modeling in Biology Network Forum, 15 - 19 July 2019, Heidelberg (Germany)
Dear colleagues, (apologies for possible multiple postings) We invite you to attend COMBINE 2019, the
unread,
COMBINE 2019: 10th Computational Modeling in Biology Network Forum, 15 - 19 July 2019, Heidelberg (Germany)
Dear colleagues, (apologies for possible multiple postings) We invite you to attend COMBINE 2019, the
5/7/19
Marco Antoniotti
4/26/19
[CDAC 2019] Workshop and School on Cancer Development and Complexity 2019, May 28-31, 2019, Lake Como, Italy
Apologies for the multiple postings… Note the early bird deadline of April 30th. Call for
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[CDAC 2019] Workshop and School on Cancer Development and Complexity 2019, May 28-31, 2019, Lake Como, Italy
Apologies for the multiple postings… Note the early bird deadline of April 30th. Call for
4/26/19
Marco Antoniotti
3/19/19
[CDAC 2019] Call for participation - May 28-31, 2019, Lake Como, Italy
Apologies for multiple postings Call for Participation Lake Como Workshop and School on Cancer
unread,
[CDAC 2019] Call for participation - May 28-31, 2019, Lake Como, Italy
Apologies for multiple postings Call for Participation Lake Como Workshop and School on Cancer
3/19/19
Jeffrey Wong
2/27/19
Pathway Commons version 11 is now online
Version 11 of Pathway Commons is now online! Pathway Commons collects and integrates pathway and
unread,
Pathway Commons version 11 is now online
Version 11 of Pathway Commons is now online! Pathway Commons collects and integrates pathway and
2/27/19
Martina Kutmon
2/7/19
Announcement
Call for Abstracts: Network Biology Track at ISMB 2019: DUE APRIL 11
Network Biology at ISMB 2019 in Basel, Tuesday July 23 rd The Network Biology track will focus on two
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Announcement
Call for Abstracts: Network Biology Track at ISMB 2019: DUE APRIL 11
Network Biology at ISMB 2019 in Basel, Tuesday July 23 rd The Network Biology track will focus on two
2/7/19
Gary Bader
1/31/19
Fwd: Registration is now open for HARMONY 2019
Begin forwarded message: From: "Michael Hucka" <mhu...@library.caltech.edu> Subject:
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Fwd: Registration is now open for HARMONY 2019
Begin forwarded message: From: "Michael Hucka" <mhu...@library.caltech.edu> Subject:
1/31/19
Marco Antoniotti
1/18/19
[CDAC 2019] Cancer Development and Complexity, Lake Como, Italy, May 28-31, 2019
Apologies for the multiple postings. Call for Participation Lake Como Workshop and School on Cancer
unread,
[CDAC 2019] Cancer Development and Complexity, Lake Como, Italy, May 28-31, 2019
Apologies for the multiple postings. Call for Participation Lake Como Workshop and School on Cancer
1/18/19