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BioPAX Level 3 Support?
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Oliver Ruebenacker  
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 More options Mar 30 2011, 11:13 am
From: Oliver Ruebenacker <cur...@gmail.com>
Date: Wed, 30 Mar 2011 11:13:18 -0400
Local: Wed, Mar 30 2011 11:13 am
Subject: BioPAX Level 3 Support?
     Hello, All,

  Which tools or data providers are currently supporting Level 3, or
are planning to do so in the near future? Thanks!

     Take care
     Oliver`

--
Oliver Ruebenacker, Computational Cell Biologist
Systems Biology Linker at Virtual Cell (http://vcell.org/sybil)
Turning Knowledge Data into Models
Center for Cell Analysis and Modeling
http://www.oliver.curiousworld.org


 
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D'Eustachio, Peter  
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 More options Mar 30 2011, 11:15 am
From: "D'Eustachio, Peter" <Peter.D'Eustac...@nyumc.org>
Date: Wed, 30 Mar 2011 11:15:03 -0400
Local: Wed, Mar 30 2011 11:15 am
Subject: RE: BioPAX Level 3 Support?
Reactome (data provider) supports level 3 already.


 
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ashok reddy Dinasarapu  
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 More options Mar 30 2011, 12:07 pm
From: ashok reddy Dinasarapu <dar...@gmail.com>
Date: Wed, 30 Mar 2011 09:07:38 -0700
Local: Wed, Mar 30 2011 12:07 pm
Subject: Re: BioPAX Level 3 Support?

SGMP (data provider) supports level3.
http://www.signaling-gateway.org/molecule/
*
*Ashok Reddy Dinasarapu, Brian Saunders, Iley Ozerlat, Kenan Azam and
Shankar Subramaniam (2011). Signaling Gateway Molecule Pages - a data model
perspective. *Bioinformatics* *(Accepted)*.


 
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Nicolas Le Novère  
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 More options Mar 30 2011, 12:17 pm
From: Nicolas Le Novère <le...@ebi.ac.uk>
Date: Wed, 30 Mar 2011 17:17:01 +0100
Local: Wed, Mar 30 2011 12:17 pm
Subject: Re: BioPAX Level 3 Support?
Hello,

BioModels Database exports the models in BioPAX3 (the relevant parts)

On 30/03/11 16:13, Oliver Ruebenacker wrote:

>       Hello, All,

>    Which tools or data providers are currently supporting Level 3, or
> are planning to do so in the near future? Thanks!

>       Take care
>       Oliver`

--
Nicolas LE NOVERE, Computational Systems Neurobiology, EMBL-EBI, WTGC,
Hinxton CB101SD UK, Mob:+447833147074, Tel:+441223494521 Fax:468,
Skype:n.lenovere, AIM:nlenovere, twitter:@lenovere
http://www.ebi.ac.uk/~lenov/, http://www.ebi.ac.uk/compneur/

 
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Suzanne Paley  
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 More options Mar 30 2011, 12:18 pm
From: Suzanne Paley <suzanne.pa...@gmail.com>
Date: Wed, 30 Mar 2011 09:18:44 -0700
Local: Wed, Mar 30 2011 12:18 pm
Subject: Re: BioPAX Level 3 Support?
BioCyc supports Level 3.

Suzanne


 
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Ozgun Babur  
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 More options Mar 30 2011, 12:45 pm
From: Ozgun Babur <ozgunba...@gmail.com>
Date: Wed, 30 Mar 2011 12:45:42 -0400
Local: Wed, Mar 30 2011 12:45 pm
Subject: Re: BioPAX Level 3 Support?
Repository version of ChiBE supports level 3.

http://sourceforge.net/projects/chibe/

Also the next release will be supporting level 3.


 
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Irma Martinez  
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 More options Mar 30 2011, 12:49 pm
From: Irma Martinez <imart...@hotmail.com>
Date: Wed, 30 Mar 2011 10:49:49 -0600
Local: Wed, Mar 30 2011 12:49 pm
Subject: RE: BioPAX Level 3 Support?

Hello,

RegulonDB data supports level 3 already.

 Regards,
Irma Martínez-Flores


 
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Huaiyu Mi  
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 More options Mar 30 2011, 1:28 pm
From: Huaiyu Mi <huaiy...@usc.edu>
Date: Wed, 30 Mar 2011 10:28:10 -0700
Local: Wed, Mar 30 2011 1:28 pm
Subject: Re: BioPAX Level 3 Support?
PANTHER pathway (http://www.pantherdb.org/pathway/pathwayList.jsp).

Huaiyu

On 3/30/11 8:13 AM, "Oliver Ruebenacker" <cur...@gmail.com> wrote:


 
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Alexander Pico  
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 More options Mar 31 2011, 8:12 pm
From: Alexander Pico <ap...@gladstone.ucsf.edu>
Date: Thu, 31 Mar 2011 17:12:02 -0700
Local: Thurs, Mar 31 2011 8:12 pm
Subject: Re: BioPAX Level 3 Support?
WikiPathways does as well. See individual download options on each pathway
page. We will add it to our batch download soon.

http://wikipathways.org

 - Alex

On 3/30/11 8:13 AM, "Oliver Ruebenacker" <cur...@gmail.com> wrote:


 
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Jyoti Sharma  
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 More options Apr 6 2011, 7:50 am
From: Jyoti Sharma <jyotibioi...@gmail.com>
Date: Wed, 6 Apr 2011 17:20:26 +0530
Local: Wed, Apr 6 2011 7:50 am
Subject: Re: BioPAX Level 3 Support?

Hi Everyone,

NetPath (http://www.netpath.org/)  supports BioPAX level 3.

Thanks,

Jyoti Sharma

On Fri, Apr 1, 2011 at 5:42 AM, Alexander Pico <ap...@gladstone.ucsf.edu>wrote:


 
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