Hi Julia, The interaction types are taken from the source database (ie prolinks, bind, dip, etc) so

Hi Hani, We no longer support BioNetBuilder. The databases are considerably out of date with our last

Hi Dario, We have been experiencing problems with the machine where the BioNetBuilder server is

Hi, The BioNetBuilder server is back up and running. Again, we cannot offer any guarantees about its

Thanks for the quick response..... BionetBuilder worked for a few hours (days ?) but is down again,

Hi Maha, Sorry for the delay. We have been having problems with this server for the last week.

Hi, Can you send me the organism and gene list (or GO annotation) you are trying to use so I can test

How to place properties file in cytoscape top directory? BioNetBuilder Wizard says unable to open

Hi, The server url may not be set properly. Go to: Plugins -> Setup Bionetbuilder Connection: And

Hi, I just sent you a username and password needed to access HPRD. Let me know if you have trouble

Hi, It does not look like we have annotations for Bos taurus in our database but the GO website

Dear Kevin: I did what you said, and it works. Thank you very much. Regards Jing On Fri, Jun 24, 2011

Hi Kevin, Thanks! That worked. I just assumed since it was red and said there were zero nodes that it

Hi, Sorry you were having problems. Occasionally, we have to restart the server and so that may have

Hi, Try it again now. It should be back up and running. Please let me know if you still have problems

Hi, Can you tell us more about your setup? Cytoscape version? Java version? Platform? Can you also

Hi, Sorry for the trouble. The problem you are experiencing is most likely due to the size of the

Hi, I have just restarted the sever. Try it again and let me know if you still have problems. Thanks,

Hi, Often times when you can find an interaction in the online database but not through BioNetBuilder

Hi Peter, It should be back up and running. Thanks for letting us know. Kevin Drew Bonneau Lab On Oct

Hi, Try it again now. I just restarted the server. Thanks, Kevin On Sep 16, 2010, at 4:14 AM, Etalo,

Hi Amy, I just restarted the server. Please let me know if you have any more problems. Thanks, Kevin

Kevin, Thanks for your help. I'm going to try using the GI numbers now. Unfortunantly, I think I

Hi, We have been experiencing a larger load than our server can handle recently which has been

Hi, How large is the network you are trying to build? I have noticed in the log files very large

Hi, I am using the bionetbuilder wizard as plugin in Cytoscape, but it can not been conncected. Do

Begin forwarded message: > From: Dario Di Silvestre > Date: July 30, 2010 10:09:33 AM EDT >

I am getting the 'We were unable to create BioNetBuilder wizard' message today, using http://

When I start the bionetbuilder wizard I get an error about it being unable to set interaction source.

Dear BioNetBuilder Plugin Group I heard about BioNetBuilder from article.Thank you first for