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jiaw...@u.northwestern.edu
,
Kevin Drew
2
7/3/14
Edge Codes
Hi Julia, The interaction types are taken from the source database (ie prolinks, bind, dip, etc) so
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Edge Codes
Hi Julia, The interaction types are taken from the source database (ie prolinks, bind, dip, etc) so
7/3/14
hani....@gmail.com
,
Kevin Drew
2
7/3/14
update in BioNetBuilder 2.0
Hi Hani, We no longer support BioNetBuilder. The databases are considerably out of date with our last
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update in BioNetBuilder 2.0
Hi Hani, We no longer support BioNetBuilder. The databases are considerably out of date with our last
7/3/14
Kevin Drew
, …
Kevin Drew
9
10/28/13
Re: R: R: problem with bionetbuilder
Hi Dario, We have been experiencing problems with the machine where the BioNetBuilder server is
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Re: R: R: problem with bionetbuilder
Hi Dario, We have been experiencing problems with the machine where the BioNetBuilder server is
10/28/13
seema
, …
Kevin Drew
6
10/15/13
BioNetBuilder setup
Hi, The BioNetBuilder server is back up and running. Again, we cannot offer any guarantees about its
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BioNetBuilder setup
Hi, The BioNetBuilder server is back up and running. Again, we cannot offer any guarantees about its
10/15/13
skm...@gmail.com
,
Kevin Drew
3
9/8/13
Server down ?
Thanks for the quick response..... BionetBuilder worked for a few hours (days ?) but is down again,
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Server down ?
Thanks for the quick response..... BionetBuilder worked for a few hours (days ?) but is down again,
9/8/13
Yerramilli, Maha
,
Kevin Drew
2
8/10/13
NCBI Taxonomy
Hi Maha, Sorry for the delay. We have been having problems with this server for the last week.
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NCBI Taxonomy
Hi Maha, Sorry for the delay. We have been having problems with this server for the last week.
8/10/13
seema
,
Kevin Drew
4
4/17/13
Edges not present in subnetwork
Hi, Can you send me the organism and gene list (or GO annotation) you are trying to use so I can test
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Edges not present in subnetwork
Hi, Can you send me the organism and gene list (or GO annotation) you are trying to use so I can test
4/17/13
seema
4/4/13
bionetbuilder setup
How to place properties file in cytoscape top directory? BioNetBuilder Wizard says unable to open
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bionetbuilder setup
How to place properties file in cytoscape top directory? BioNetBuilder Wizard says unable to open
4/4/13
rinkusha...@gmail.com
,
Kevin Drew
3
11/28/12
unable to set interaction sources on the server
Hi, The server url may not be set properly. Go to: Plugins -> Setup Bionetbuilder Connection: And
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unable to set interaction sources on the server
Hi, The server url may not be set properly. Go to: Plugins -> Setup Bionetbuilder Connection: And
11/28/12
Guido Leoni
,
Kevin Drew
2
7/12/11
Problem in retriving interactions from HPRD
Hi, I just sent you a username and password needed to access HPRD. Let me know if you have trouble
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Problem in retriving interactions from HPRD
Hi, I just sent you a username and password needed to access HPRD. Let me know if you have trouble
7/12/11
Robert Domingues
,
Kevin Drew
2
7/11/11
Select nodes by GO
Hi, It does not look like we have annotations for Bos taurus in our database but the GO website
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Select nodes by GO
Hi, It does not look like we have annotations for Bos taurus in our database but the GO website
7/11/11
jing lu
,
Kevin Drew
5
6/28/11
selected nodes but not the network for these selected nodes
Dear Kevin: I did what you said, and it works. Thank you very much. Regards Jing On Fri, Jun 24, 2011
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selected nodes but not the network for these selected nodes
Dear Kevin: I did what you said, and it works. Thank you very much. Regards Jing On Fri, Jun 24, 2011
6/28/11
Kevin Drew
,
Amy Olex
2
6/20/11
Re: BioNet Builder not working
Hi Kevin, Thanks! That worked. I just assumed since it was red and said there were zero nodes that it
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Re: BioNet Builder not working
Hi Kevin, Thanks! That worked. I just assumed since it was red and said there were zero nodes that it
6/20/11
Basnet, Ram Kumar
,
Kevin Drew
2
6/17/11
Problem in installing BionetBuilder plugin
Hi, Sorry you were having problems. Occasionally, we have to restart the server and so that may have
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Problem in installing BionetBuilder plugin
Hi, Sorry you were having problems. Occasionally, we have to restart the server and so that may have
6/17/11
cheer xing
,
Kevin Drew
3
6/13/11
Bug in the node sources panel
Hi, Try it again now. It should be back up and running. Please let me know if you still have problems
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Bug in the node sources panel
Hi, Try it again now. It should be back up and running. Please let me know if you still have problems
6/13/11
Suk Ling
,
Kevin Drew
2
5/18/11
Unable to start bionetbuilder
Hi, Can you tell us more about your setup? Cytoscape version? Java version? Platform? Can you also
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Unable to start bionetbuilder
Hi, Can you tell us more about your setup? Cytoscape version? Java version? Platform? Can you also
5/18/11
karim mezhoud
,
Kevin Drew
2
5/2/11
Calculate Edges but no networks
Hi, Sorry for the trouble. The problem you are experiencing is most likely due to the size of the
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Calculate Edges but no networks
Hi, Sorry for the trouble. The problem you are experiencing is most likely due to the size of the
5/2/11
Jia-Hong Wu
,
Kevin Drew
2
2/23/11
unable to create bionetbuilder wizard
Hi, I have just restarted the sever. Try it again and let me know if you still have problems. Thanks,
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unable to create bionetbuilder wizard
Hi, I have just restarted the sever. Try it again and let me know if you still have problems. Thanks,
2/23/11
Kevin Drew
,
Jia-Hong Wu
3
2/10/11
Re: Questions about BioNetBuilder
Hi, Often times when you can find an interaction in the online database but not through BioNetBuilder
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Re: Questions about BioNetBuilder
Hi, Often times when you can find an interaction in the online database but not through BioNetBuilder
2/10/11
Baarlen, Peter van
,
Kevin Drew
2
10/5/10
error in node source selection
Hi Peter, It should be back up and running. Thanks for letting us know. Kevin Drew Bonneau Lab On Oct
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error in node source selection
Hi Peter, It should be back up and running. Thanks for letting us know. Kevin Drew Bonneau Lab On Oct
10/5/10
Kevin Drew
9/16/10
Re: unable to set interaction source
Hi, Try it again now. I just restarted the server. Thanks, Kevin On Sep 16, 2010, at 4:14 AM, Etalo,
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Re: unable to set interaction source
Hi, Try it again now. I just restarted the server. Thanks, Kevin On Sep 16, 2010, at 4:14 AM, Etalo,
9/16/10
Amy Olex
,
Kevin Drew
2
9/2/10
BioNetBuilder not working
Hi Amy, I just restarted the server. Please let me know if you have any more problems. Thanks, Kevin
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BioNetBuilder not working
Hi Amy, I just restarted the server. Please let me know if you have any more problems. Thanks, Kevin
9/2/10
Amy Olex
,
Kevin Drew
5
8/23/10
Found a bug in the Node Source panel
Kevin, Thanks for your help. I'm going to try using the GI numbers now. Unfortunantly, I think I
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Found a bug in the Node Source panel
Kevin, Thanks for your help. I'm going to try using the GI numbers now. Unfortunantly, I think I
8/23/10
Kevin Drew
8/4/10
Re: Help
Hi, We have been experiencing a larger load than our server can handle recently which has been
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Re: Help
Hi, We have been experiencing a larger load than our server can handle recently which has been
8/4/10
Kevin Drew
,
Dario Di Silvestre
6
8/2/10
bionetbuilder server restart
Hi, How large is the network you are trying to build? I have noticed in the log files very large
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bionetbuilder server restart
Hi, How large is the network you are trying to build? I have noticed in the log files very large
8/2/10
Tingting Weng
7/26/10
Can not create bioNetBuilder
Hi, I am using the bionetbuilder wizard as plugin in Cytoscape, but it can not been conncected. Do
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Can not create bioNetBuilder
Hi, I am using the bionetbuilder wizard as plugin in Cytoscape, but it can not been conncected. Do
7/26/10
Richard Bonneau
7/30/10
Fwd: R: problem with bionetbuilder
Begin forwarded message: > From: Dario Di Silvestre > Date: July 30, 2010 10:09:33 AM EDT >
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Fwd: R: problem with bionetbuilder
Begin forwarded message: > From: Dario Di Silvestre > Date: July 30, 2010 10:09:33 AM EDT >
7/30/10
Kevin Drew
,
heather
2
7/26/10
Fwd: No access to interaction sources
I am getting the 'We were unable to create BioNetBuilder wizard' message today, using http://
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Fwd: No access to interaction sources
I am getting the 'We were unable to create BioNetBuilder wizard' message today, using http://
7/26/10
Katie
7/8/10
Trouble accessing BionetBuilder
When I start the bionetbuilder wizard I get an error about it being unable to set interaction source.
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Trouble accessing BionetBuilder
When I start the bionetbuilder wizard I get an error about it being unable to set interaction source.
7/8/10
cheer xing
5/20/10
Wish to use HPRD database
Dear BioNetBuilder Plugin Group I heard about BioNetBuilder from article.Thank you first for
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Wish to use HPRD database
Dear BioNetBuilder Plugin Group I heard about BioNetBuilder from article.Thank you first for
5/20/10